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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence
[GCTGAAAATCGCTTCGACCAAATATTCCAATTCACTTCTAACAACAACTAGTCCATATTCCTTTAACGATTGTTCGAATACACCCCAGAATCATTTGACAAAGTCTAATACACCGACTACCGATGGTCGTACATGCAAACTACTTCAAATGTTTATGTCTCCATCTACACCAATCGTAAAAAAGTTATCACCATTTATCTGTGATCATATTTCTCCACAAATTCAAATGAATGATGAGGATAAATTTCCTTCAATACCTAAACGAACTGTCATGTCTCATTATCAATCTAACCTAGAATGGGTTAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCATTAATGAAACCAGTTCATTACCATGTTGGCAAGTTGTCAATGAGGATTCGCGATCCAATATATCATTCATTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATTGTCTAGTCTGAAAAATAAAAGGTCAAGAACTTTATTTACAGAAGACAATGGCAAAATTAGTGGCGTTNGGTAGTGTACGCCCTGACTTACTCATTAGTAGAAGTAGTAAACGAGAATCACAAGAAGTGACTAGGTATGANAGAAGATCACAACAAACTATTCAACATTCCAATCATAGAAAGAGTCAATTGANAAAGATTTCATCTGTTAACACGATAGACAACAACGTTCTTTACTGGAATTTTNTANATATAGTAATTAAATTAATTTATGCCTGAATATTTTTCTTACATGAGTAGTAATGTCAGACTGCTACCATACAGTNGTCACTTCTGGTTATAGTATATTNCTTTTGACTATCTAGGNAATTNGGGTGGGATACTTTGATATATCACTCATCTTTAACACATTAATCGGTTTTACTGACTATTATGGTTC]
[+] EMBL CD082056 [GCTGAAAATCGCTTCGACCAAATATTCCAATTCACTTCTAACAACAACTAGTCCATATTCCTTTAACGATTGTTCGAATACACCCCAGAATCATTTGACAAAGTCTAATACACCGACTACCGATGGTCGTACATGCAAACTACTTCAAATGTTTATGTCTCCATCTACACCAATCGTAAAAAAGTTATCACCATTTATCTGTGATCATATTTCTCCACAAATTCAAATGAATGATGAGGATAAATTTCCTTCAATACCTAAACGAACTGTCATGTCTCATTATCAATCTAACCTAGAATGGGTTAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCATTAATGAAACCAGTTCATTACCATGTTGGCAAGTTGTCAATGAGGATTCGCGATCCAATATATCATTCATTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATTGTCTAGTCTGAAAAATAAAAGGTCAAGAACTTTATTTACAGAAGACAATGGCAAAATTAGTGGCGTTNGGTAGTGTACGCCCTGACTTACTCATTAGTAGAAGTAGTAAACGAGAATCACAAGAAGTGACTAGGTATGANAGAAGATCACAACAAACTATTCAACATTCCAATCATAGAAAGAGTCAATTGANAAAGATTTCATCTGTTAACACGATAGACAACAACGTTCTTTACTGGAATTTTNTANATATAGTAATTAAATTAATTTATGCCTGAATATTTTTCTTACATGAGTAGTAATGTCAGACTGCTACCATACAGTNGTCACTTCTGGTTATAGTATATTNCTTTTGACTATCTAGGNAATTNGGGTGGGATACTTTGATATATCACTCATCTTTAACACATTAATCGGTTTTACTGACTATTATGGTTC]
consensusID : consensus_7874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence
[GGGACTCCAGCTACGCTCCCGAATGTGATCATCCGCTTCGTCGATGGNCTTCAGGTTTGATTCATCTGGTGGATTCCATCAATAAGTGTCACGACGTATTATCTGGGGTTGCTGATGATAGTTTGTTGGCATCAGGCACTGCTAATTCACTAATGACCGTTGATGATGCTGTGAAATCTGTATGCCAATGTATTCGTGTTTCATGTAGTATTTTGCGGAAACCTGGTGTAATTGATGGAAGTATGCATGAAAAAATGAAGACAACTATAAATTTTTCGGAAATCCCTGATGTCTGCGATAGTCTTATCAAACGTATTTATCAGTTGTCTTCCACAAATATTATTTCAAACATGTGCTGTGATACACCCGATAGACCCTTACATGCAGGAGGAACCGTACGAGGCAGAGGAGCCTTCAAACTCATACGTGTATTACTTGTAACTGAATCTGAAAGACTGAAAATCGCTTCGACCAAATATTCCAATTCACTTCTAACAACAACTAGTCCATATTCCTTTAACGATTGTTCGAATACACCCCAGAATCATTTGACAAAGTCTAATACACCGACTACCGATGGTCGTACATGCAAACTACTTCAAATGTTTATGTCTCCATCTACACCAATCGTAAAAAAGTTATCACCATTTATCTGTGATCATATTTCTCCACAAATTCAAATGAATGATGAGAATAAATTTCCTTCAATAGTATGTTCTGGTTTAAGTAAATGATGCATATGTAT]
[+] EMBL CD096600 [GGGACTCCAGCTACGCTCCCGAATGTGATCATCCGCTTCGTCGATGGNCTTCAGGTTTGATTCATCTGGTGGATTCCATCAATAAGTGTCACGACGTATTATCTGGGGTTGCTGATGATAGTTTGTTGGCATCAGGCACTGCTAATTCACTAATGACCGTTGATGATGCTGTGAAATCTGTATGCCAATGTATTCGTGTTTCATGTAGTATTTTGCGGAAACCTGGTGTAATTGATGGAAGTATGCATGAAAAAATGAAGACAACTATAAATTTTTCGGAAAT ]
[+] EMBL CD127861 [ TCATTTGGTGGATTCCATCAATAAGTGTCACGACGTATTATCTGGGGTTGCTGATGATAGTTTGTTGGCATCAGGCACTGCTAATTCACTAATGACCGTTGATGATGCTGTGAAATCTGTATGCCAATGTATTCGTGTTTCATGTAGTATTTTGCGGAAACCTGGTGTAATTGATGGAAGTATGCATGAAAAAATGAAGACAACTATAAATTTTTCGGAAATCCCTGATGTCTGCGATAGTCTTATCAAACGTATTTATCAGTTGTCTTCCACAAATATTATTTCAAACATGTGCTGTGATACACCCGATAGACCCTTACATGCAGGAGGAACCGTACGAGGCAGAGGAGCCTTCAAACTCATACGTGTATTACTTGTAACTGAATCTGAAAGACTGAAAATCGCTTCGACCAAATATTCCAATTCACTTCTAACAACAACTAGTCCATATTCCTTTAACGATTGTTCGAATACACCCCAGAATCATTTGACAAAGTCTAATACACCGACTACCGATGGTCGTACATGCAAACTACTTCAAATGTTTATGTCTCCATCTACACCAATCGTAAAAAAGTTATCACCATTTATCTGTGATCATATTTCTCCACAAATTCAAATGAATGATGAGAATAAATTTCCTTCAATAGTATGTTCTGGTTTAAGTAAATGATGCATATGTAT]
consensusID : consensus_7874#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence
[TAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCATTAATGAAACCAGTTCATTACCATGTTGGCAAGTTGTCAATGAGGATTCGCGATCCAANTATATCATTCATTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATTGTCTAGTCTGAAAAATAAAAGGTCAAGAACTTTATTTACAGAAGACAATGGCAAAATTAGTGGCGTTGGTAGTGTACGCCCTGACTTACTCATTAGTAGAAGTAGTAAACGAGAATCACAAGAAGTGACTAGGTATGAAAGAAGATCACAACAAACTATTCAACATTCCAATCATAGAAAGAGTCAATTGAAAAAGATTTCATCTGTTAACAACGATAGACAACAACGTTCTTTACTGGAATTTTTTAAAATATAGTAATTAAATTAAATTTATGCCTGAAATATTTTTTCTTAACAATGAGTAGTAATTGTCAGAACTGACTACCATAACAGTTTGTCAACTTTCTGTTTTATAGTTATATTTTCTTTTTGGTACTTATCTCATGTTATTTGTGTTGTGTATACTTTGTATTATATTCACTTCAATCTTTTATAGCAACATTTATACGTGTATTTTACTGAGCTTATTTTATTGTTTCTAAATGTTTTTGCAGGAATGTCT]
[-] EMBL CD077204 [TAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCATTAATGAAACCAGTTCATTACCATGTTGGCAAGTTGTCAATGAGGATTCGCGATCCAANTATATCATTCATTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATTGTCTAGTCTGAAAAATAAAAGGTCAAGAACTTTATTTACAGAAGACAATGGCAAAATTAGTGGCGTTGGTAGTGTACGCCCTGACTTACTCATTAGTAGAAGTAGTAAACGAGAATCACAAGAAGTGACTAGGTATGAAAGAAGATCACAACAAACTATTCAACATTCCAATCATAGAAAGAGTCAATTGAAAAAGATTTCATCTGTTAACAACGATAGACAACAACGTTCTTTACTGGAATTTTTTAAAATATAGTAATTAAATTAAATTTATGCCTGAAATATTTTTTCTTAACAATGAGTAGTAATTGTCAGAACTGACTACCATAACAGTTTGTCAACTTTCTGTTTTATAGTTATATTTTCTTTTTGGTACTTATCTCATGTTATTTGTGTTGTGTATACTTTGTATTATATTCACTTCAATCTTTTATAGCAACATTTATACGTGTATTTTACTGAGCTTATTTTATTGTTTCTAAATGTTTTTGCAGGAATGTCT]
[-] EMBL CD075671 [ GATTCGCGATCCAA TATATCATTCATTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATTGTCTAGTCTGAAAAATAAAAGGTCAAGAACTTTATTTACAGAAGACAATGGCAAAATTAGTGGCGTTGGTAGTGTACGCCCTGACTTACTCATTAGTAGAAGTAGTAAACGAGAATCCCAAGAAGTGACTAGGTATGAAAGAAGATCCCACCAAACTATTCAACATTCCAATCATAGAAAGAGTCAATTGAAAAAGATTTCATCTGTTAACAACGATAGACAACAACGTTCTTTACTGGAATTTTTTAAAATATAGTAATTAAATTAAATTTATGCCTGAAATATTTTTTCTTACCAATGAGTAGTAATTGTCAGAACTGACTCCCATAACAGTTTGTCAACTTTCTGTTTTATAGTTATATTTTCTTTTTGGTACTTATCTCATGTTATTTGTGTTGTGTATACTTTGTATTATATTCACTTCAATCTTTTATAGCAACATTTATACGTGTATTTTACTGAGCTTATTTTATTGTTTCTAAATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7874#0 GCTGAAAATCGCTTCGACCAAATATTCCAATTCACTTCTAACAACAACTAGTCCATATTC 60
consensus_7874#2 ------------------------------------------------------------
consensus_7874#1 ------------------------------------------------------------
consensus_7874#0 CTTTAACGATTGTTCGAATACACCCCAGAATCATTTGACAAAGTCTAATACACCGACTAC 120
consensus_7874#2 ------------------------------------------------------------
consensus_7874#1 ------------------------------------------------------------
consensus_7874#0 CGATGGTCGTACATGCAAACTACTTCAAATGTTTATGTCTCCATCTACACCAATCGTAAA 180
consensus_7874#2 ------------------------------------------------------------
consensus_7874#1 ------------------------------------------------------------
consensus_7874#0 AAAGTTATCACCATTTATCTGTGATCATATTTCTCCACAAATTCAAATGAATGATGAGGA 240
consensus_7874#2 ------------------------------------------------------------
consensus_7874#1 ---------------------------------------------------------GGG 3
consensus_7874#0 TAAATTTCCTTCAATACCTAAACGAACTGTCATGTCTCATTATCAATCTAACCTAGAATG 300
consensus_7874#2 ------------------------------------------------------------
consensus_7874#1 ACTCCAGCTACGCTCCCGAATGTGATCATCCGCTTCGTCGATGGNCTTCAGGTTTGATTC 63
consensus_7874#0 GGTTAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCA-TTAATGAAACCAGTT 359
consensus_7874#2 ---TAGTGGTCATTGTTCCCCATTAGTTAGTTATGCTTACTCCA-TTAATGAAACCAGTT 56
consensus_7874#1 ATCTGGTGGATTCCATCAATAAGTGTCACGACGTATTATCTGGGGTTGCTGATGATAGTT 123
* **** * * * * * * ** ** *** ****
consensus_7874#0 CATTACCAT-----GTTGGCAAGTTGTCAATGAGGATTCGCGATCCAAT-ATATCATTCA 413
consensus_7874#2 CATTACCAT-----GTTGGCAAGTTGTCAATGAGGATTCGCGATCCAANTATATCATTCA 111
consensus_7874#1 TGTTGGCATCAGGCACTGCTAATTCACTAATGACCGTTGATGATGCTGTGAAATCTGTAT 183
** *** ** ** * ***** ** *** * * *** *
consensus_7874#0 TTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATT--GTCTAGTCTGAAAAATAA 471
consensus_7874#2 TTAAAAGCAACTATTCTGAACATGGAACTCCAACTAAATT--GTCTAGTCTGAAAAATAA 169
consensus_7874#1 GCCAATGTATTCGTGTTTCATGTAGTATTTTGCGGAAACCTGGTGTAATTGATGGAAGTA 243
** * * * * * * * * * *** ** ** * ** *
consensus_7874#0 AAGGTCAAGAACTTTATTTA-CAGAAGACAATGGCAAAATTAGTGGCGTTNGGTAGTGTA 530
consensus_7874#2 AAGGTCAAGAACTTTATTTA-CAGAAGACAATGGCAAAATTAGTGGCGTTGG-TAGTGTA 227
consensus_7874#1 TGCATGAAAAAATGAAGACAACTATAAATTTTTCGGAAATCCCTGATGTCTGCGATAGTC 303
* ** ** * * * * * * * **** ** ** * * **
consensus_7874#0 CGCCCTGACTTACTCATTAGTAGAAGTA-GTAAACGAGAATCACAAGAAGTGACTAGGTA 589
consensus_7874#2 CGCCCTGACTTACTCATTAGTAGAAGTA-GTAAACGAGAATCACAAGAAGTGACTAGGTA 286
consensus_7874#1 TTATCAAACGTATTTATCAGTTGTCTTCCACAAATATTATTTCAAACATGTGCTGTGATA 363
* ** ** * ** *** * * *** * * ** * *** * **
consensus_7874#0 TGANAGA-AGATCACAACAAACTATTCAA--CATTCCAATCATAGAAAGAGTCAA-TTGA 645
consensus_7874#2 TGAAAGA-AGATCACAACAAACTATTCAA--CATTCCAATCATAGAAAGAGTCAA-TTGA 342
consensus_7874#1 CACCCGATAGACCCTTACATGCAGGAGGAACCGTACGAGGCAGAGGAGCCTTCAAACTCA 423
** *** * *** * * * * * * ** ** * **** * *
consensus_7874#0 NAAAGATTTCATCTGTTAACA----CGATAGACAACAACGTTCTTTACTGGAATTTTNTA 701
consensus_7874#2 AAAAGATTTCATCTGTTAACAA---CGATAGACAACAACGTTCTTTACTGGAATTTTTTA 399
consensus_7874#1 TACGTGTATTACTTGTAACTGAATCTGAAAGACTGAAAATCGCTTCGACCAAATATTCCA 483
* * * * *** * ** **** ** *** *** ** *
consensus_7874#0 NA-TA-TAGTAATTAAATTAA-TTTATGCCTGAA-TATTTTT-CTTAC--ATGAGTAGTA 754
consensus_7874#2 AAATA-TAGTAATTAAATTAAATTTATGCCTGAAATATTTTTTCTTAACAATGAGTAGTA 458
consensus_7874#1 ATTCACTTCTAACAACAACTAGTCCATATTCCTTTAACGATTGTTCGAATACACCCCAGA 543
* * *** * * * * ** * ** * * *
consensus_7874#0 AT-GTCAGA--CTG-CTACCATA-CAGTN-GTCA--CTTCTGGTT-ATAGT---ATATTN 802
consensus_7874#2 ATTGTCAGA-ACTGACTACCATAACAGTTTGTCAACTTTCTGTTTTATAGTTATATTTTC 517
consensus_7874#1 ATCATTTGACAAAGTCTAATACACCGACTACCGATGGTCGTACATGCAAACTACTTCAAA 603
** * ** * *** * * * * * * * * *
consensus_7874#0 CTTTTG-AC---TATCT-AGGNAATTNGGGTGGG--ATACTTTGA--TATAT-CACTC-- 850
consensus_7874#2 TTTTTG-GTACTTATCTCATGTTATTTGTGTTGTGTATACTTTGTATTATATTCACTTCA 576
consensus_7874#1 TGTTTATGTCTCCATCT-ACACCAATCGTAAAAAAGTTATCACCATTTATCTGTGATCAT 662
*** **** * * * * ** *** * *
consensus_7874#0 ATCTTTAACA----CATTAATCGGT----TTTACTGAC----TATTATGGTTC------- 891
consensus_7874#2 ATCTTTTATAGCAACATTTATACGTGTATTTTACTGAGCTTATTTTATTGTTTCTAAATG 636
consensus_7874#1 ATTTCTC-CACAAATTCAAATGAATGATGAGAATAAATTTCCTTCAATAGTATGTTCTGG 721
** * * * ** * * * * ** **
consensus_7874#0 ------------------------
consensus_7874#2 TTTTTGCAGG-AATGTCT------ 653
consensus_7874#1 TTTAAGTAAATGATGCATATGTAT 745
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||