cluster # 7876

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Schistosoma mansoni
cluster # 7876 cluster # 7876 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7876#0 length = 852 sequences # 2

consensus_7876#1 length = 728 sequences # 2
consensus_7876#2 length = 183 sequences # 1

consensusID : consensus_7876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 852
fasta sequence

                              [TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTTTGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAACTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCA-CATCGATTTTTTCCTGTTTA-ATGAGCCAATAAATTAAAT]

[+] EMBL CD079299             [TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTTTGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAACTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCA CATCGATTTTTTCCTGTTTA ATGAGCCAATAAATTAA  ]
[-] EMBL CD073579             [                                                                                                                                                                                                             GATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAAAAGTCGATAATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCAAGATAACTGAACATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCACCATCGATTTTTTCCTGTTTATATGAGCCAATAAAATAAAT]




>consensus_7876#0
TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTT
TGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGA
TAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAA
CTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCA
CGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTT
ACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCT
CCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTT
GAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCAT
CTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATAT
TTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAAT
AGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAAT
CAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATTCCG
TTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAGCGTT
CATTGAACAGGTTTTATACGTAGCTTGTGACCACATCGATTTTTTCCTGTTTAATGAGCC
AATAAATTAAAT

consensusID : consensus_7876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 728
fasta sequence

                              [ACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAATTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGTTCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGATGAATTTTATGCACAAAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCTATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGTGAATATCTTAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT]

[+] EMBL AI977008             [ACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAATTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGTTCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGATGAATTTTATGCACAAAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGG                                                                                                                                                                                                                                            ]
[+] EMBL CD111566             [                                                                                                                                                                                                                                                                                           tGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTCACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCTATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGTGAATATCTTAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT]




>consensus_7876#1
ACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGA
CGAGGATCGCAAAGTCAAATTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTA
TCAATGACCAACAATACCACGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGC
CAAAGGATTTAGCAAATGTTCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAG
ATGAATTTTATGCACAAAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGC
AATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACAC
GTTGGCTTACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGAT
TAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATG
GAACTAGCATGGCTATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCC
AAGTATTTGATCGTGAATATCTTAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTG
ACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTC
GCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTG
AACAAGTT

consensusID : consensus_7876#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [TTATTCGGCACCGGGCTGATAATCATATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGAAGATATTCTAAATCAAACTAAG]

[+] EMBL CD081195             [TTATTCGGCACCGGGCTGATAATCATATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGAAGATATTCTAAATCAAACTAAG]




>consensus_7876#2
TTATTCGGCACCGGGCTGATAATCATATTTGACGTACAGCGTTACAATGAATTACGTGAC
GAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTA
CCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGAAGATATTCTAAATCAAACT
AAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7876#1      ------------------------------------------------------------
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTT 60
                                                                                  

consensus_7876#1      -----------------------------------------ACTTCATAAAATGTGAAGA 19
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      TGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGA 120
                                                                                  

consensus_7876#1      TAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAA 79
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      TAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAA 180
                                                                                  

consensus_7876#1      TTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCA 139
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      CTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCA 240
                                                                                  

consensus_7876#1      CGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGT 199
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      CGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTT 300
                                                                                  

consensus_7876#1      TCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGA---TGAATTTTATGCACA 256
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      ACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCT 360
                                                                                  

consensus_7876#1      AAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGG--AACCATTT 314
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      CCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTT 420
                                                                                  

consensus_7876#1      GAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGG 374
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      GAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCAT 480
                                                                                  

consensus_7876#1      CTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAA 434
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      CTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCA---CTAGGTCTGTAAGGA 537
                                                                                  

consensus_7876#1      TATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCT 494
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      TATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCG 597
                                                                                  

consensus_7876#1      ATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGT 554
consensus_7876#2      ------------------------------------------------------------
consensus_7876#0      AATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGT 657
                                                                                  

consensus_7876#1      GAATATCT-TAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGAC-GTACAGCGTT 612
consensus_7876#2      --------------TTATTCGGCACCGGGCTGATAA-TCAT-ATTTGAC-GTACAGCGTT 43
consensus_7876#0      AATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATT 717
                                       **    *      *  *     ** ** ***  **   ** **

consensus_7876#1      ACAATGAATTACGTGA-CGAACTAGCTCATTTGAAGTCAGAACTACG-TCGCCTTAAAGA 670
consensus_7876#2      ACAATGAATTACGTGA-CGAACTAGCTCATTTGAAGTCAGAACTACG-TCGCCTTAAAGA 101
consensus_7876#0      CCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAG- 776
                       *  **  ***    * * ** **  **     ** * *  * *  * * *  ****** 

consensus_7876#1      TCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT-- 728
consensus_7876#2      TCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGA 161
consensus_7876#0      -CGTTCATTGAACAGGTTTTATACGTAGCTTG-TGACCACATCGATTTTTTCCTGTTTAA 834
                       * *   **  *   ***   *    * *    ***  * ** *    *   *   **  

consensus_7876#1      ----------------------
consensus_7876#2      AGATATTCTAAATCAAACTAAG 183
consensus_7876#0      TGAGCCAATAAATTAAAT---- 852