cluster # 7879

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Schistosoma mansoni
cluster # 7879 cluster # 7879 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7879#0 length = 105 sequences # 2
consensus_7879#1 length = 96 sequences # 1

consensus_7879#2 length = 93 sequences # 1
consensus_7879#3 length = 83 sequences # 1

consensusID : consensus_7879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 105
fasta sequence

                              [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG]

[+] EMBL CD093382             [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG]
[+] EMBL CD093218             [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG]




>consensus_7879#0
GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAAC
ACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG

consensusID : consensus_7879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 96
fasta sequence

                              [GTCAACATTTAAGAAAGTCATTTCTTCTTTTGGGAGATAGAATCTTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAATGGTATGACAGTCAG]

[+] EMBL CD164117             [GTCAACATTTAAGAAAGTCATTTCTTCTTTTGGGAGATAGAATCTTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAATGGTATGACAGTCAG]




>consensus_7879#1
GTCAACATTTAAGAAAGTCATTTCTTCTTTTGGGAGATAGAATCTTTCGGCTCCAAAAAC
AACACTCCCTTCAGATCACAATGGTATGACAGTCAG

consensusID : consensus_7879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence

                              [CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTTGTTTTCGAAATATTTCTATCTCCCAAAAGAAGAAATGACTTTCTTAAATGTTGA]

[+] EMBL CD164169             [CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTTGTTTTCGAAATATTTCTATCTCCCAAAAGAAGAAATGACTTTCTTAAATGTTGA]




>consensus_7879#2
CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTTGTTTTCGAAATATTTCTATCT
CCCAAAAGAAGAAATGACTTTCTTAAATGTTGA

consensusID : consensus_7879#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 83
fasta sequence

                              [AAAGTCATTTCTTCTTTTGGGAGATAGAAATATTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAAAG]

[+] EMBL CD164151             [AAAGTCATTTCTTCTTTTGGGAGATAGAAATATTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAAAG]




>consensus_7879#3
AAAGTCATTTCTTCTTTTGGGAGATAGAAATATTTCGGCTCCAAAAACAACACTCCCTTC
AGATCACAAAAGCTTAACAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7879#0      GTCAACATTTAAGAAAGTCATTT-CTTCT-----GAGATAGAAATATTTCGGCTTCCAAA 54
consensus_7879#1      GTCAACATTTAAGAAAGTCATTT-CTTCTTTTGGGAGATAGAA-TCTTTCGGCT-CCAAA 57
consensus_7879#3      -------------AAAGTCATTT-CTTCTTTTGGGAGATAGAAATATTTCGGCT-CCAAA 45
consensus_7879#2      ---------CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTT--GTTTTCGAAA 49
                                   *  *****   *** *       **  * * * **  *  * * ***

consensus_7879#0      AACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG 105
consensus_7879#1      AACAACACTCCCTTCAGATCACAA------------TGGTATGACAGTCAG 96
consensus_7879#3      AACAACACTCCCTTCAGATCACAAA------------AGCTTAACAAAAG- 83
consensus_7879#2      TATTTCTATCTCCCAAAAGAAGAAATG-------ACTTTCTTAAATGTTGA 93
                       *   *  ** *   * *  * **                 * *