These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 411 fasta sequence [CAATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCAT--CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG] [+] EMBL CD150011 [CAATGTATCGTANCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACACTCGTTGCCATTCTCATCAT CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG] [-] EMBL CD150127 [ AATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCATCACACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCGGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT ] [-] EMBL CD150112 [ AATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCATCACACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT ] [-] EMBL CD150033 [ ATCAT CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCGTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT ] consensusID : consensus_7885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCACATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATTCAAGCCACAAATCCGGTA] [-] EMBL CD191460 [TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCACATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATTCAAGCCACAAATCCGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7885#0 CAATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCC 60 consensus_7885#1 ------------------------------------------------------------ consensus_7885#0 TGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCA 120 consensus_7885#1 ------------------------------------------------------------ consensus_7885#0 TCACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACAC 180 consensus_7885#1 ------------TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACAC 48 ************************************************ consensus_7885#0 AACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATG 240 consensus_7885#1 AACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATG 108 ************************************************************ consensus_7885#0 GGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCAC 300 consensus_7885#1 GGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCAC 168 ********************************** ************************* consensus_7885#0 ATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACA 360 consensus_7885#1 ATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACA 228 ************************************************************ consensus_7885#0 GGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG--------- 411 consensus_7885#1 GGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCA 288 ************************************ ** * * consensus_7885#0 ------------------------------------------------------------ consensus_7885#1 CATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATT 348 consensus_7885#0 ------------------ consensus_7885#1 CAAGCCACAAATCCGGTA 366 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||