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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1670 fasta sequence
[TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTGCAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATTCTTCTGACTGTGGTTTGTAATTTCGAAATAT-CGG-TTGGGTAATTCTCCATTATCACCATTGTTTAAGTGTATAATAC-TTTATGTGATGCA-TTTTCATACGTAATTGCTTTAGACGTTCTTTACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACAATTGATACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAATTAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATAATAAAGTATCACAACAACGTAAACGTCGTAAAACACGTACAACATTTTCTAATTGTCAATTAAATGAATTAGAAAATAATTTTAATCGTCAACGTTATTTAACTCCAACTGATCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCAAAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTTAAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGAAACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGATAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAACACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAACATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAATCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTACTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAATAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTATTAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAAGCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATTCTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG]
[+] EMBL SMSMOXV [TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTGCAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATTCTTCTGACTGTGGTTTGTAATTTCGAAATAT CGGTTTGGGTAATTCTCCATTATCACCATTGTTTAAGTGTATAATACTTTTATGTGATGCATTTTTCATACGTAATTGCTTTAGACGTTCTTTACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATGATTATTGATACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAATTAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATAATAAAGTATCACAACAACGTAAACGTCGTAAAACACGTACAACATTTTCTAATTGTCAATTAAATGAATTAGAAAATAATTTTAATCGTCAACGTTATTTAACTCCAACTGATCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCAAAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTTAAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGAAACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGATAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAACACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAACATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAATCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTACTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAATAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTATTAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAAGCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATTCTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG]
[-] EMBL AI168862 [ CAGCA GCAA TCACCATCTTTTAATTCTTCTGACTGTGG TTGTAATTTCG AATAT CGG TTGGGT ATTCTCCATTATCACCATTGTTTAAGMG WTAATAC TTTATGGGATGCA TTTTCATACGTAATTGCTTTAGACGTTCTTT TACCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTC TTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACA ]
[-] EMBL AI168861 [ TATCCGG TT GGTAA TCTCCATTATCACCATTGTT AG GTATAATAC TTTATGTGATGCA TTTTCATACGTAATTGCTTTAGACGTTCTTTTAGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACA ]
consensusID : consensus_7889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence
[TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTCTAAAGAAAATGAAATAAAAGTATAAATTTGCATTGGACGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGTTCGATTTTTAAAAATTATCATTGATACCACCATTACTATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTTTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTAGATATGGATTAAATTCTAACCTAGTTTGAAAAGCTAATAACTGATATCAGGTTTTACTCTAAAAGCTGTATAAATCACAGTTTCTATGTGAAAAATGTAAACAATAACTGATCGCTTAGGTAGAAATAACCACAACAAACTTCTAACTGGAATATAAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCGCTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGTGCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCTTAAACTGGAAATCATCATGTGCTCACTAGTTACTAGACTCAGAAGGAAGTTCCCGGAATTCTAGTGAGAAACCGTAACCAGTGAAGCTAATCCG]
[+] EMBL CD073025 [TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTCTAAAGAAAATGAAATAAAAGTATAAATTTGCATTGGACGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGTTCGATTTTTAAAAATTATCATTGATACCACCATTACTATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTTTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTA ]
[-] EMBL CD078558 [ TATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTNTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTAGATATGGATTAAATTCTAACCTAGTTTGAAAAGCTAATAACTGATATCAGGTTTTACTCTAAAAGCTGTATAAATCACAGTTTCTATGTGAAAAATGTAAACAATAACTGATCGCTTAGGTAGAAATAACCACAACAAACTTCTAACTGGAATATAAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCGCTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGTGCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCTTAAACTGGAAATCATCATGTGCTCACTAGTTACTAGACTCAGAAGGAAGTTCCCGGAATTCTAGTGAGAAACCGTAACCAGTGAAGCTAATCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7889#0 TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTC 60
consensus_7889#1 -----------------TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTC 43
*******************************************
consensus_7889#0 AAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGA 120
consensus_7889#1 AAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGA 103
************************************************************
consensus_7889#0 CACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTT 180
consensus_7889#1 CACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTT 163
************************************************************
consensus_7889#0 CTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTG 240
consensus_7889#1 CTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTG 223
************************************************************
consensus_7889#0 CAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTG 300
consensus_7889#1 CAAGACTTGCTAGATT----CTAAAGAAAATGA--AATAAAAGTATAAATTTGCATTGGA 277
**************** * * *** * * * * ** ***
consensus_7889#0 CAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATT 360
consensus_7889#1 CGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGT--TCGATTT 335
* * * * *** * ** * * * ** ** * * * * **
consensus_7889#0 CTTCTGACTGTGGTTTGTAATTTCGAAATATCGGTTGGGTAATTCTCCATTATCACCATT 420
consensus_7889#1 TTAAAAATTATCATTGATACCACC--ATTACTATTT---TAA--CTCCACTCATATAGTT 388
* * * * ** ** * * ** ** *** ***** * * **
consensus_7889#0 GTTTAAGTGTATAATACTTTATGTGATGCATTTTCATACGTAATTGCTTTAGACGTTCTT 480
consensus_7889#1 -CTTATGAGT----TTTTTTGCGCTA-ACAATAGCAAATGAAACCACTGCATATTTATGC 442
*** * ** * *** * * ** * ** * * ** ** * * *
consensus_7889#0 TACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACAT 540
consensus_7889#1 CAGATCTTAGGGTTGC-TTGTGAATGATGAGAATGAACT-------CTCA--ATCAATGT 492
* **** ** * * * * ** * *** *** *** ***** *
consensus_7889#0 GATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTT 600
consensus_7889#1 AG--ATTGCCT-TCTAATCGCCTTGATTT----AAACAATCAGTTAACGGCATTGACTGT 545
** ** *** * *** **** * * ** * ** * * * * *
consensus_7889#0 CTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACAATTGA 660
consensus_7889#1 CGCACACTAGATATGGATTA--AATTCTAACC---TAGT--TTGAAAAGCTAATAACTGA 598
* ** *** *** ** * ** * *** * ** * * * ** ***
consensus_7889#0 TACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAAT 720
consensus_7889#1 TA---TCAGGTTTTACTCTAAAAGCTGTA---TAAATCACAGTTTCTATG-TGAAAAATG 651
** *** ** * * ** * *** ** * ** ** **** ** ** *
consensus_7889#0 TAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATA 780
consensus_7889#1 TAAACAATAAC--TGATCGCTTAGGTA--------GAAATAACCACAACAAACTTCTA-A 700
**** ** * **** ** ** * **** * * **** * * ** ** *
consensus_7889#0 ATAAAGTATCACAACAACGTAAACGTCGTAAAACAC---GTACAACATT---TTCTAATT 834
consensus_7889#1 CTGGAATAT---AAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCG 757
* * *** ** * *** ** * * ** * ** **** ***
consensus_7889#0 GTCA-ATTAAATGAATTAGAAAATAATTTTAATCGT-CAACGTTATTTAACTCCAACTGA 892
consensus_7889#1 CTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGT 817
* * * ** * *** * **** *** * ******* ** ** *
consensus_7889#0 TCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCA 952
consensus_7889#1 GCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCT------TAAACTGG 871
* ** * *** * **** ** * ** ** * * * *
consensus_7889#0 AAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTT 1012
consensus_7889#1 AAATCATCATGTGCTCACTAGTTACTAGACTCAGAAG---GAAGTTCCCGGAATTCTAGT 928
***** ** * * * ** ** * *** * * *** *
consensus_7889#0 AAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGA 1072
consensus_7889#1 GAGAAACCGTAACCAGTGAAG-CTAATCCG------------------------------ 957
***** * ** ** ** * * *
consensus_7889#0 AACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGA 1132
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 TAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAAC 1192
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 ACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAAC 1252
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 ATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAA 1312
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 TCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTA 1372
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 CTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAA 1432
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 TAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTAT 1492
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 TAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAA 1552
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 GCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATT 1612
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 CTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG 1670
consensus_7889#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||