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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence
[GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACGTTTCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAAATCAGCACGAAGTGTGGAGAATAAGTCTCTAGCTGAATCACCAAGTGATCCTGGNTAGAATNCAACCTTNAGNCCAATANNAGCAGAAAAAAGTNCAAAATGANAGTGCTCTAGTGGTCAANTCANTTTCGTGGCTACTACTATGGAATCANGTTTAACAGTACGAAAGCGAAATGGGAGATGGAACCTATGGTCGTACTTAGCGAAGTATAAAATA]
[+] EMBL CD081872 [GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACGTTTCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAAATCAGCACGAAGTGTGGAGAATAAGTCTCTAGCTGAATCACCAAGTGATCCTGGNTAGAATNCAACCTTNAGNCCAATANNAGCAGAAAAAAGTNCAAAATGANAGTGCTCTAGTGGTCAANTCANTTTCGTGGCTACTACTATGGAATCANGTTTAACAGTACGAAAGCGAAATGGGAGATGGAACCTATGGTCGTACTTAGCGAAGTATAAAATA]
consensusID : consensus_7892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGACGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATCACTTTGTTTTATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTAAGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACATAATGCACCTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAGTAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGTTTTGCTTCGATAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTTCTCAGCTGNAAGCATTGTGTCGTAATTCAGCANAT]
[+] EMBL CD078565 [TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGACGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATCACTTTGTTTTATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTAAGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACATAATGCACCTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAGTAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGTTTTGCTTCGATAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTTCTCAGCTGNAAGCATTGTGTCGTAATTCAGCANAT]
consensusID : consensus_7892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[CCGTCTGGTCACTTAAAACATGGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACGTTTCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAATCAGCAACGAAGTGTGGAGATTAAGTCTCTAGCTGAATCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAGTACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGCTACTAACTATGGACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTTATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT]
[-] EMBL CD073032 [CCGTCTGGTCACTTAAAACATGGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACGTTTCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAATCAGCAACGAAGTGTGGAGATTAAGTCTCTAGCTGAATCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAGTACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGCTACTAACTATGGACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTTATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT]
consensusID : consensus_7892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[CTGTTAGCCAATATTGTAATCTAATCATTGACTTCTTGATCTGGTAGATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTAGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATGTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCACCTGCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACACTGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTAGTGCATAAGATATTCTATAGTCATTTATTGTTATTCATAGCATTATAGTGTTCATCTAATGATAAAGATTAGTATCTGTTTAAATAA]
[-] EMBL CD196710 [CTGTTAGCCAATATTGTAATCTAATCATTGACTTCTTGATCTGGTAGATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTAGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATGTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCACCTGCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACACTGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTAGTGCATAAGATATTCTATAGTCATTTATTGTTATTCATAGCATTATAGTGTTCATCTAATGATAAAGATTAGTATCTGTTTAAATAA]
consensusID : consensus_7892#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[ATGGAGGTAAGTGGAACTCAGTAATCAGACATACACTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCATTTGAAGTCAGTTGACTATTATTTGTACTCCCACAACAGCAGNTCCATAATATCTCTGAGTCTCCTGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCACAAAGACGCTCTTGAAGCATTCCATACACGACATGGAGTTGTCCTCCATGATACGCCAAT]
[+] EMBL CD145737 [ATGGAGGTAAGTGGAACTCAGTAATCAGACATACACTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCATTTGAAGTCAGTTGACTATTATTTGTACTCCCACAACAGCAGNTCCATAATATCTCTGAGTCTCCTGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCACAAAGACGCTCTTGAAGCATTCCATACACGACATGGAGTTGTCCTCCATGATACGCCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7892#0 GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCG 60
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 GTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAA 120
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 GTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAA 180
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 AATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATA 240
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 ATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATA 300
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 TTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGC 360
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 ------------------------------------------------------------
consensus_7892#0 CACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCA 420
consensus_7892#2 ------------------------------------------------------------
consensus_7892#3 ------------------------------------------------------------
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 --------------TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGA 46
consensus_7892#0 ATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACT 480
consensus_7892#2 --------------------------------------------------CCGTCTGGTC 10
consensus_7892#3 -----------------------------------------------------------C 1
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 CGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATC 106
consensus_7892#0 TCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGAC- 539
consensus_7892#2 ACTTAAAACATG------------GGCATTGTCGTGTTATATTTACCAATCAAAAAGAC- 57
consensus_7892#3 TGTTAGCCAATA-----------TTGTAATCTAATCATTGACTTCTTGATCTGGTAGATT 50
consensus_7892#4 -------------------------ATGGAGGTAAGTGGAACTCAGTAATCAGACATACA 35
consensus_7892#1 ACTTTGTTT-TATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTA 165
*
consensus_7892#0 ---GCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAAC 596
consensus_7892#2 ---GCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAAC 114
consensus_7892#3 A--GCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGT 108
consensus_7892#4 CTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCAT 95
consensus_7892#1 AGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACA-TAATGCAC 224
** * * * *
consensus_7892#0 TTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACG---TT 653
consensus_7892#2 TTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACG---TT 171
consensus_7892#3 GACAAATTT----TTAGGAGATATTCCTGTT-GCTGTGGCGTTGTGTTCTGAGCG---CT 160
consensus_7892#4 TTGAAGTCAG---TTGACTATTATTTGTACT-CCCACAACAGCAGNTCCATAATA---TC 148
consensus_7892#1 CTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTT 284
** * * *
consensus_7892#0 TCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAA 713
consensus_7892#2 TCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAA 231
consensus_7892#3 GTAA-ATCTCC--GTCTAATAGTT----------GGAGGCCACCACAATCATATGAACTA 207
consensus_7892#4 TCTGAGTCTCC-----TGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCA 203
consensus_7892#1 GTCAGAGTTCAGGATCGGTTGAGTCTACACAG-TCCTGTTGGAAATCCTTTTACAAAGCG 343
* * *
consensus_7892#0 AGTAATTCTCAT-TTAAAATCAGCA-----CGAAGTGTGGAGAATAAGTCTCTAGCTGAA 767
consensus_7892#2 AGTAATTCTCAT-TTAAA-TCAGCAA----CGAAGTGTGGAGATTAAGTCTCTAGCTGAA 285
consensus_7892#3 AGTGATTTTAAT-GTGAA-TAAACTG----TATGTAGCAGGTATCAATCGTCGATCACCT 261
consensus_7892#4 CA-AAGACGCTC-TTGAAGCATTCCA----TACACGACATGGAGTTGTCCTCCAT--GAT 255
consensus_7892#1 GAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATC 403
* ** * *
consensus_7892#0 TCACCAAGTGATCCTGGNTAGAATNCAA-CCTTNAGNCCAATANNAGCAG---AAAAAAG 823
consensus_7892#2 TCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAG 345
consensus_7892#3 GCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCAT--------TG 313
consensus_7892#4 ACGCCAAT---------------------------------------------------- 263
consensus_7892#1 TCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCG----AATAAG 459
*
consensus_7892#0 TNCAAAA-TGANAGTGC-TCTAGTGGT-CAANTCANTTTCG--TGGC--TACTA-CTATG 875
consensus_7892#2 TACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGC--TACTAACTATG 403
consensus_7892#3 TACAC---TGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTA-G 369
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 TAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGT---TTTGCTTCGA 516
consensus_7892#0 GA-ATCANGTTT----AACAGTAC---GAAAGCGAAA-----TGGGAGATGGAA---CCT 919
consensus_7892#2 GACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTT 463
consensus_7892#3 TGCATAAGATAT-----TCTATAGTCATTTATTGTTATT---CATAGCATTATAGTGTTC 421
consensus_7892#4 ------------------------------------------------------------
consensus_7892#1 TAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTT 576
consensus_7892#0 ATG-----GTCGTACTTAGC--GAAGTATAAAATA------------- 947
consensus_7892#2 ATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT 511
consensus_7892#3 ATCTAATGATAAAGATTAGTATCTGTTTAAATAA-------------- 455
consensus_7892#4 ------------------------------------------------
consensus_7892#1 CTCAGCT-GNAAGCATTGTGTCGTAATTCAGCANAT------------ 611
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||