These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 717 fasta sequence [GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGTATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGCAATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATCAATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAATTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC] [+] EMBL CD137318 [GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGTATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGCAATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATCAATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAATTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGGATCTGCGAAGTCCTTTTGGCC ] [+] EMBL CD177824 [ tGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAAAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCTAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC] [+] EMBL CD179037 [ CGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCcttccac ] [-] EMBL CD178814 [ TTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTA ] consensusID : consensus_7894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [GAACGTTCACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCACCTCGTGCCGCCTCGGACCGAATT] [-] EMBL CD078035 [GAACGTTCACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCACCTCGTGCCGCCTCGGACCGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7894#0 GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGT 60 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 ATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGC 120 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 AATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATC 180 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 AATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAA 240 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 TTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACC 300 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 TACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATT 360 consensus_7894#1 ------------------------------------------------------------ consensus_7894#0 ATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTC 420 consensus_7894#1 ----------------------------------------------------GAACGTTC 8 ******** consensus_7894#0 ACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATT 480 consensus_7894#1 ACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATT 68 ***** ***************************************************** consensus_7894#0 TGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATT 540 consensus_7894#1 TGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATT 128 ************************************************************ consensus_7894#0 AGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATAT 600 consensus_7894#1 AGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATAT 188 ************************************************************ consensus_7894#0 GTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTC 660 consensus_7894#1 GTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTC 248 ************************************************************ consensus_7894#0 GCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC 717 consensus_7894#1 GCCTTTCTGATCACCT---CGTGCCGCCTCGGACCGAATT----------------- 285 ************* * * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||