cluster # 7895

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Schistosoma mansoni
cluster # 7895 cluster # 7895 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7895#0 length = 633 sequences # 3

consensus_7895#1 length = 534 sequences # 2

consensusID : consensus_7895#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 633
fasta sequence

                              [TCTCTGGCCAANATTCGGCACGAGGCCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD080757             [TCTCTGGCCAANATTCGGCACGAGGCCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTT                                     ]
[-] EMBL CD074681             [                          CCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTA                                    ]
[-] EMBL AI394840             [                                                                                                                                                                                               aAACTTTCCCAATGATAATAATACTGAGGTTAGTGATTTGGATACCATCAAAACTGATCTGTCGTTATGATACGCCATCAATGCTTTGTCTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCTTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACACCAGGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7895#0
TCTCTGGCCAANATTCGGCACGAGGCCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGC
ACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAA
GAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTA
AACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATC
AAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGC
AACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCG
TTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAA
GAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAG
AAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACC
TTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTATAC
TTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7895#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 534
fasta sequence

                              [GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT]

[+] EMBL BF937033             [GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT]
[+] EMBL SMAA18475            [                                                                          AGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTNAGGTGCAA                                                                                                                                                                                                                                 ]




>consensus_7895#1
GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGC
CTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAAT
ACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACA
GCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGA
TGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCT
TAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAAT
GAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACT
GGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAA
AACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7895#0      -TCTCTGGCCAANATTC----GGCACGA--GGCCCGGACCCGTTTCGAGGCTATTTTGGC 53
consensus_7895#1      GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGC 60
                          * *  ***  *      ****  *  * ****************************

consensus_7895#0      CTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAAT 113
consensus_7895#1      CTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAAT 120
                      ***************** ******************************************

consensus_7895#0      ACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACA 173
consensus_7895#1      ACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACA 180
                      ************************************************************

consensus_7895#0      GCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGA 233
consensus_7895#1      GCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGA 240
                      ************************************************************

consensus_7895#0      TGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCT 293
consensus_7895#1      TGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCT 300
                      ************************************************************

consensus_7895#0      TAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAAT 353
consensus_7895#1      TAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAAT 360
                      ************************************************************

consensus_7895#0      GAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACT 413
consensus_7895#1      GAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACT 420
                      ************************************************************

consensus_7895#0      GGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAA 473
consensus_7895#1      GGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAA 480
                      ************************************************************

consensus_7895#0      AACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGG 533
consensus_7895#1      AACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT------ 534
                      ******************************************************      

consensus_7895#0      GAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAA 593
consensus_7895#1      ------------------------------------------------------------
                                                                                  

consensus_7895#0      TTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 633
consensus_7895#1      ----------------------------------------