These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 706 fasta sequence [TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA-CAAGCC---TGTTCTACTGGCC-TAC-TTG-AAATGTTTAC-CGC-TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA] [+] EMBL CD080753 [TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA CAAGCC TGTTCTACTGGCC TAC TTG AAATGTTTAC CGC TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGA ] [-] EMBL CD074677 [ AAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA CAAGCC TGTTCTACTGGCC TAC TTG AAATGTTTAC CGC TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA] [+] EMBL AI618984 [ GAATTAAAAGCTAGCCGTGTGTCCTACTGGCCATACTTTGAAAATGTTTACGCGCTTTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGTGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACCACGTTCCAACTTAACAAGAGAAGCTGCCACCATTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTAGCGATGTATGGGATTAtctg ] consensusID : consensus_7896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [ATCAAGAATTGTATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTAGATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA] [+] EMBL CD132217 [ATCAAGAATTGTATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTAGATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA] consensusID : consensus_7896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCCTGATAGTTTAACAAAGCATCCTTTCCCCTGCCCATGTACCTATCGTCATGCATTTATGCACTTTGTTGATATTACTGGA] [+] EMBL BG931879 [CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCCTGATAGTTTAACAAAGCATCCTTTCCCCTGCCCATGTACCTATCGTCATGCATTTATGCACTTTGTTGATATTACTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7896#1 ------------------------------------------------------------ consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAG 60 consensus_7896#1 ------------------------------------------------ATCAAGAATTGT 12 consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 TCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGT 120 consensus_7896#1 ATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTA 72 consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 TGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATC 180 consensus_7896#1 GATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAA 132 consensus_7896#2 ---------------CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAA 45 consensus_7896#0 GAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGAC 240 * *** * ** ** * **** * * * * * consensus_7896#1 AAATTGGGG-ATCTCCTAAACATTGATTTGAATGAAATGATTA-----GTTTAGATGCTG 186 consensus_7896#2 AAATTGGGG-ATCTCCTAAACATTGATTTGAATGAAATGATTA-----GTTTAGATGCTG 99 consensus_7896#0 AGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAAT 300 * ** * * ** * * * **** ** **** ** *** * consensus_7896#1 TTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTA 246 consensus_7896#2 TTGATCC--TGATAGTTTAA--------CAAAGCATCCTTTCC--CCTGCCCATGTACCT 147 consensus_7896#0 TAAAACA--AGCCTGTTCTACTGGCCTACTTGAAATGTTTACCG-CTTTCTCACGTGACT 357 * * * * * * ** * * * ** consensus_7896#1 CAAGACTTGA-AATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCT 305 consensus_7896#2 ATCGTCATG-----CATTTATGCACTTTGTTGATATT--ACTGGA--------------- 185 consensus_7896#0 GTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGT--GCTTGAGATGGGTAACATGGT 415 ** * * * * * * ** consensus_7896#1 AAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACAT 365 consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 GTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTAT 475 consensus_7896#1 AACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA-------------------- 405 consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 GGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAG 535 consensus_7896#1 ------------------------------------------------------------ consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 AGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGT 595 consensus_7896#1 ------------------------------------------------------------ consensus_7896#2 ------------------------------------------------------------ consensus_7896#0 ATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATG 655 consensus_7896#1 --------------------------------------------------- consensus_7896#2 --------------------------------------------------- consensus_7896#0 AACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA 706 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||