cluster # 7896

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Schistosoma mansoni
cluster # 7896 cluster # 7896 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7896#0 length = 706 sequences # 3

consensus_7896#1 length = 405 sequences # 1
consensus_7896#2 length = 185 sequences # 1

consensusID : consensus_7896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 706
fasta sequence

                              [TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA-CAAGCC---TGTTCTACTGGCC-TAC-TTG-AAATGTTTAC-CGC-TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA]

[+] EMBL CD080753             [TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA CAAGCC   TGTTCTACTGGCC TAC TTG AAATGTTTAC CGC TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGA ]
[-] EMBL CD074677             [                                                                                                                                   AAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGACAGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAATTAAAA CAAGCC   TGTTCTACTGGCC TAC TTG AAATGTTTAC CGC TTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA]
[+] EMBL AI618984             [                                                                                                                                                                                                                                                                                                        GAATTAAAAGCTAGCCGTGTGTCCTACTGGCCATACTTTGAAAATGTTTACGCGCTTTTCTCACGTGACTGTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGTGTAACATGGTGTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACCACGTTCCAACTTAACAAGAGAAGCTGCCACCATTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTAGCGATGTATGGGATTAtctg                                                                                                  ]




>consensus_7896#0
TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAG
TCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGT
TGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATC
GAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGAC
AGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAAT
TAAAACAAGCCTGTTCTACTGGCCTACTTGAAATGTTTACCGCTTTCTCACGTGACTGTC
TTGATGGTAATAAAGTTTATGTTCAGCATAAGGTGCTTGAGATGGGTAACATGGTGTGGA
AACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTATGGTGC
GTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAGAGAAG
CTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGTATGGA
AGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATGAACCT
TTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA

consensusID : consensus_7896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [ATCAAGAATTGTATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTAGATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA]

[+] EMBL CD132217             [ATCAAGAATTGTATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTAGATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA]




>consensus_7896#1
ATCAAGAATTGTATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTG
CTTCTCAACTTAGATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAG
ATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAG
ATGCTGTTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGAT
GTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAAC
CCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATA
CACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA

consensusID : consensus_7896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCCTGATAGTTTAACAAAGCATCCTTTCCCCTGCCCATGTACCTATCGTCATGCATTTATGCACTTTGTTGATATTACTGGA]

[+] EMBL BG931879             [CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCCTAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCCTGATAGTTTAACAAAGCATCCTTTCCCCTGCCCATGTACCTATCGTCATGCATTTATGCACTTTGTTGATATTACTGGA]




>consensus_7896#2
CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAAAAATTGGGGATCTCC
TAAACATTGATTTGAATGAAATGATTAGTTTAGATGCTGTTGATCCTGATAGTTTAACAA
AGCATCCTTTCCCCTGCCCATGTACCTATCGTCATGCATTTATGCACTTTGTTGATATTA
CTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7896#1      ------------------------------------------------------------
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      TACGAGGCCANAATTCGGCACGAGGCTCCAAGTGGATTTTAGAAGATCATCGTGGGCTAG 60
                                                                                  

consensus_7896#1      ------------------------------------------------ATCAAGAATTGT 12
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      TCGATGTGTTACAAGACTTGAAATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGT 120
                                                                                  

consensus_7896#1      ATCATAAAAGTTCACGTTCTTGTCGCCATATTGAACTGGATGTGTCTGCTTCTCAACTTA 72
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      TGAACCCTCTAAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATC 180
                                                                                  

consensus_7896#1      GATATAAAACTGGTGATCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAA 132
consensus_7896#2      ---------------CTCATATTGCAATATTTGCATCAAATCCTTTAGATCTTGTCGAAA 45
consensus_7896#0      GAATACACATAACTGCTTCTATAGTAAAATACAAAACAAACTCAGTTGGCAAGACTGGAC 240
                                      *  *** * ** **    * ****  *  * *        * * 

consensus_7896#1      AAATTGGGG-ATCTCCTAAACATTGATTTGAATGAAATGATTA-----GTTTAGATGCTG 186
consensus_7896#2      AAATTGGGG-ATCTCCTAAACATTGATTTGAATGAAATGATTA-----GTTTAGATGCTG 99
consensus_7896#0      AGATGGTGTTATTTTTTGGTTGCCGGCATGAAAATAAAGATTTTATTTATTCAGACGAAT 300
                      * ** * *  ** *  *       *   ****   ** ****       ** *** *   

consensus_7896#1      TTGATCAAATTATACTCCAAGTGGATTCCAGAAGATCATCGTGGGCTAGTCGATGTGTTA 246
consensus_7896#2      TTGATCC--TGATAGTTTAA--------CAAAGCATCCTTTCC--CCTGCCCATGTACCT 147
consensus_7896#0      TAAAACA--AGCCTGTTCTACTGGCCTACTTGAAATGTTTACCG-CTTTCTCACGTGACT 357
                      *  * *         *   *        *     **  *      *      * **    

consensus_7896#1      CAAGACTTGA-AATCATTTCGACCACCAGCTGATCTTTTGTTGGAGTTGTTGAACCCTCT 305
consensus_7896#2      ATCGTCATG-----CATTTATGCACTTTGTTGATATT--ACTGGA--------------- 185
consensus_7896#0      GTCTTGATGGTAATAAAGTTTATGTTCAGCATAAGGT--GCTTGAGATGGGTAACATGGT 415
                             **      *  *         *   *   *    * **               

consensus_7896#1      AAAACCAAGATTGTACAGTATATCATCGTCTTCATTAGTTCATACAAATCGAATACACAT 365
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      GTGGAAACTTTTGGATGAATGTTATGCGTACATTTATGTATGTGGGGATGCCGCTGGTAT 475
                                                                                  

consensus_7896#1      AACTGCTTCTATAGTAAAATACAAAACAAACTCAGGAGCA-------------------- 405
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      GGTGCGTGACGTCCATTTGTGTTTAATCGAATTAGTAGTACAACGTTCCAACTTAACAAG 535
                                                                                  

consensus_7896#1      ------------------------------------------------------------
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      AGAAGCTGCAACCAGTTATGTACTGAACCTACGAAAGCAAGGACGATATCGTACCGATGT 595
                                                                                  

consensus_7896#1      ------------------------------------------------------------
consensus_7896#2      ------------------------------------------------------------
consensus_7896#0      ATGGAAGTAATTGTAAATACGCCTCTGAATAATATGTGCCGTGTAACACATTTTTTCATG 655
                                                                                  

consensus_7896#1      ---------------------------------------------------
consensus_7896#2      ---------------------------------------------------
consensus_7896#0      AACCTTTATTGATAACCCCTAATTAATAATGTCTTGTTAAATTGTCTAGAA 706