cluster # 7897

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Schistosoma mansoni
cluster # 7897 cluster # 7897 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7897#0 length = 761 sequences # 3

consensus_7897#1 length = 361 sequences # 2

consensusID : consensus_7897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 761
fasta sequence

                              [CGAGGCCANAATTCGGCACGAGGCCGCACGAGGCTTTGTGCAAGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATTTATTCTCTTGGCGTATTACCGGATTTTTGTGGTCTTTTCCACAACGTGCTGAATCTATCAAAGGATGGAGATCTGCACATGGTGCATCGGCTAGATCAAAGATCTCAGCTCATTTAACCAGTTGTCATTATAACGATAAAACCATACGTGTATTTCCATTCTGTTATTTGGAATGAATAAAACCTTGAATAACAAAATAATAAGTCTGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGATAGTACAATTAGTCACTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCAAACTAGCTTACTTCTAATCATTTGAATGCCTTTATATTGTCTTCTTTCTGAAATCGCATCAAAATAACCATCAACTATCGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTCTTAAGTATTATCTACTTTCTAATACATACACATAGCATGCCATTATTATGTGACGATGAACAGTATAAGAATTCACTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACTATTTTCTTTATTTCGCGCCTGTTTAAGTTTTATTACGTACAATG-AAGACCCTGTAAAAATCTATAAAAATATAT-TTGTACGTACATAATAAAATATATCGTT]

[+] EMBL CD080749             [CGAGGCCANAATTCGGCACGAGGCCGCACGAGGCTTTGTGCAAGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATTTATTCTCTTGGCGTATTACCGGATTTTTGTGGTCTTTTCCACAACGTGCTGAATCTATCAAAGGATGGAGATCTGCACATGGTGCATCGGCTAGATCAAAGATCTCAGCTCATTTAACCAGTTGTCATTATAACGATAAAACCATACGTGTATTTCCATTCTGTTATTTGGAATGAATAAAACCTTGAATAACAAAATAATAAGTCTGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGATAGTACAATTAGTCACTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCAAACTAGCTTACTTCTAATCATTTGAATGCCTTTATATTGTCTTCTTTCTGAAATCGCATCAAAATAACCATCAACTATCGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTCTTAAGTATTATCTACTTTCTAATACATACACATAGCATGCCATTATTATGTGACGATGAACAGTATAAGAATTCACTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACTATTTTCTNTATTTCGCGCCTGTTTAAGTTTTATTACGTACAATGAAAGACCCTGT ANAATCTATANAAATATATNNTGTACGTACATAATANAATATATCGT ]
[-] EMBL CD074673             [                                                                                                                                                                               GTGCATCGGCTAGATCAAAGATCTCAGCTCATTTAACCAGTTGTCATTATAACGATAAAACCATACGTGTATTTCCATTCTGTTATTTGGAATGAATAAAACCTTGAATAACAAAATAATAAGTCTGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGATAGTACAATTAGTCACTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCAAACTAGCTTACTTCTAATCATTTGAATGCCTTTATATTGTCTTCTTTCTGAAATCGCATCAAAATAACCATCAACTATCGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTCTTAAGTATTATCTACTTTCTAATACATACACATAGCATGCCATTATTATGTGACGATGAACAGTATAAGAATTCACTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACTATTTTCTTTATTTCGCGCCTGTTTAAGTTTTATTACGTACAATG AAGAACCTGTAAAAATCTATAAAAATATAT TTGTACGTACATAATAAAATATATCGTT]
[-] EMBL CD077109             [                                                                                                                                                                                                                                                                 TTATTTGGAATGAATAAACCCTTGAATAACAAAATAATAAGTCTGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGATAGTCCAATTAGTCCCTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCAAACTAGCTTACTTTTAATCATTTGAAGGCCTTTATATTGTCTTCTTTCTGAAATCGCATCAAAATACCCATCAACTATGGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTCTTAAGTATTATCTACTTTTTAATACATACACATAGCATGCCATTATTATGTGCCGATGACCAGTATAAGAATTCCCTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACTATTTTTTTTATTTCGCGCCTGTTTAAGTTTTATTACGTCCAATG AAGACCCTGTAAAAATCTATAAAAATATAT TTGTACGTACATAATAAAATATATCGTT]




>consensus_7897#0
CGAGGCCANAATTCGGCACGAGGCCGCACGAGGCTTTGTGCAAGGTTAATTGTCATACCA
CAATGGGATAAAGTTCATCACAGATCATCAGATTTATTCTCTTGGCGTATTACCGGATTT
TTGTGGTCTTTTCCACAACGTGCTGAATCTATCAAAGGATGGAGATCTGCACATGGTGCA
TCGGCTAGATCAAAGATCTCAGCTCATTTAACCAGTTGTCATTATAACGATAAAACCATA
CGTGTATTTCCATTCTGTTATTTGGAATGAATAAAACCTTGAATAACAAAATAATAAGTC
TGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGAT
AGTACAATTAGTCACTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCAA
ACTAGCTTACTTCTAATCATTTGAATGCCTTTATATTGTCTTCTTTCTGAAATCGCATCA
AAATAACCATCAACTATCGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTCT
TAAGTATTATCTACTTTCTAATACATACACATAGCATGCCATTATTATGTGACGATGAAC
AGTATAAGAATTCACTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACTA
TTTTCTTTATTTCGCGCCTGTTTAAGTTTTATTACGTACAATGAAGACCCTGTAAAAATC
TATAAAAATATATTTGTACGTACATAATAAAATATATCGTT

consensusID : consensus_7897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 361
fasta sequence

                              [TTCGTTGTCCATTGTCTTTTTTAGGTTGTAAATATGCTGTAGTTAATCTCCGTCCCAATAGTGAATATAATCATTTACTGTATAATCCAACTCTTGCCACATTTACAACGCGCTATGAATCAGAAACTAATCAACATAATATACTTACTCCTTATTCAAAATTAACAAATAGTGAATGTTTTAATTTTGATCAGTTGCCTGCAGAACTTTTAATTTATTTATCTTTTTTCTTAGATGATATGTCTTTACTTTGTTTATCTAAAGTTTCTAACCGATTATCTACCGTATATAAAAATATTCTTTGTGCAGGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATTT]

[+] EMBL CD156666             [TTCGTTGTCCATTGTCTTTTTTAGGTTGTAAATATGCTGTAGTTAATCTCCGTCCCAATAGTGAATATAATCATTTACTGTATAATCCAACTCTTGCCACATTTACAACGCGCTATGAATCAGAAACTAATCAACATAATATACTTACTCCTTATTCAAAATTAACAAATAGTGAATGTTTTAATTTTGATCAGTTGCCTGCAGAACTTTTAATTTATTTATCTTTTTTCTTAGATGATATGTCTTTACTTTGTTTATCTAAAGTTTCTAACCGATTATCTACCGTATATAAAAATATTCTTTGTGCAGGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATTT]
[+] EMBL CD156725             [TTCGTTGTCCATTGTCTTTTTTAGGTTGTAAATATGCTGTAGTTAATCTCCGTCCCAATAGTGAATATAATCATTTACTGTATAATCCAACTCTTGCCACATTTACAACGCGCTATGAATCAGAAACTAATCAACATAATATACTTACTCCTTATTCAAAATTAACAAATAGTGAATGTTTTAATTTTGATCAGTTGCCTGCAGAACTTTTAATTTATTTATCTTTTTTCTTAGATGATATGTCTTTACTTTGTTTATCTAAAGTTTCTAACCGATTATCTACCGTATATAAAAATATTCTTTGTGCAGGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATTT]




>consensus_7897#1
TTCGTTGTCCATTGTCTTTTTTAGGTTGTAAATATGCTGTAGTTAATCTCCGTCCCAATA
GTGAATATAATCATTTACTGTATAATCCAACTCTTGCCACATTTACAACGCGCTATGAAT
CAGAAACTAATCAACATAATATACTTACTCCTTATTCAAAATTAACAAATAGTGAATGTT
TTAATTTTGATCAGTTGCCTGCAGAACTTTTAATTTATTTATCTTTTTTCTTAGATGATA
TGTCTTTACTTTGTTTATCTAAAGTTTCTAACCGATTATCTACCGTATATAAAAATATTC
TTTGTGCAGGGTTAATTGTCATACCACAATGGGATAAAGTTCATCACAGATCATCAGATT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7897#0      CGAGGCCANAATTCGGCACGAGGCCGCACGAGGCTTTGTGCAAGGTTAATTGTCATACCA 60
consensus_7897#1      ------------------------------------------------------------
                                                                                  

consensus_7897#0      CAATGGGATAAAGTTCATCACAGATCATCAGATTTATTCTCTTGGCGTATTACCGGATTT 120
consensus_7897#1      ------------------------------------------------------------
                                                                                  

consensus_7897#0      TTGTGGTCTTTTCCACAACGTGCTGAATCTATCAAAGGATGGAGATCTGCACATGGTGCA 180
consensus_7897#1      -------------------------------------------------TTCGTTGTCCA 11
                                                                         * * ** **

consensus_7897#0      TCGGCTAGATCAAAGATCTCAGCTCATTTAACCAGTTGTCATTATAACGATAAAACCATA 240
consensus_7897#1      TTGTCTTTTTTAGGTTGTAAATATGCTGTAGTTAATCTCCGTCCCAATAGTGAATATAAT 71
                      * * **   * *        *  *  * **   * *   * *   **   * **   *  

consensus_7897#0      CGTGTATT-TCCATTCTGTTATTTGGAATGAATAAAACCTTGAATAACAAAATAATAAGT 299
consensus_7897#1      CATTTACTGTATAATCCAACTCTTGCCACATTTACAACGCGCTATGA----ATCAGAAAC 127
                      * * ** * *  * **      ***  *    ** ***     ** *    ** * **  

consensus_7897#0      CTGTCAGCAAGGCATATTTAGCTCTCTCCACTTCCTTAATATCATAATACCTGGATTAGA 359
consensus_7897#1      TAATCAACATAATATACTTA-CTCCTTATTCAAAATTAACAA-ATAGTGAATGTTTTA-- 183
                         *** **    *** *** ***  *   *    **** *  *** *   **  ***  

consensus_7897#0      TAGTACAATTAGTCACTTGGGAAATATTTAAACAAATAGTACTACACTTACAGATAACCA 419
consensus_7897#1      -ATTTTGATCAGTTGCCTGCAGAACTTTTAATTTATTTAT-CTTTTTTCTTAGATGATAT 241
                       * *   ** ***  * **   **  *****   * *  * **    *   **** *   

consensus_7897#0      AACTAGCTTACTTCTAATCATTTGAATGCCTTTATATTGTCTTCTTTCTGAAATCGCATC 479
consensus_7897#1      GTCT---TTACTT-TGTTTATCTAAA-GTTTCTA-ACCGATTATCTACCGTA----TATA 291
                        **   ****** *  * ** * ** *  * ** *  *  *   * * * *     ** 

consensus_7897#0      AAAATAACCATCAACTATCGTATTCATGATTAAACTACTTTAGATAAATAAGTGGTTCTC 539
consensus_7897#1      AAAATATTCTTTG--TGCAGGGTTAATTGTCATACCACAATGG---GATAAA--GTTCA- 343
                      ******  * *    *   *  ** **  * * ** **  * *    ****   ****  

consensus_7897#0      TTAAGTATTATCTACTTTCTAATACATACACATAGCATGCCATTATTATGTGACGATGAA 599
consensus_7897#1      TCACAGATCATCAGATTT------------------------------------------ 361
                      * *   ** ***   ***                                          

consensus_7897#0      CAGTATAAGAATTCACTTTTTTTTAAAAATCATTGACTTATGAAATGTTTCCATCGAACT 659
consensus_7897#1      ------------------------------------------------------------
                                                                                  

consensus_7897#0      ATTTTCTTTATTTCGCGCCTGTTTAAGTTTTATTACGTACAATGAAGACCCTGTAAAAAT 719
consensus_7897#1      ------------------------------------------------------------
                                                                                  

consensus_7897#0      CTATAAAAATATATTTGTACGTACATAATAAAATATATCGTT 761
consensus_7897#1      ------------------------------------------