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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 748 fasta sequence
[ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTNTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGGGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTTCGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAAACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCATATTAGGTGACAGTAAATTCGATGTACGGG]
[+] EMBL CD129837 [ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTNTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGGGATAGATT ]
[-] EMBL CD139071 [ ACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGACCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTCTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTta ]
[+] EMBL CD193393 [ GCTAGCTTCCAATTGTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGGTCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGAC ]
[+] EMBL CD094868 [ ATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTTCGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAAACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCATATTAGGTGACAGTAAATTCGATGTACGGG]
consensusID : consensus_7898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[TGAATTAACAATGTTNTCATGACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCTGCTCATGAATTTTCAATACATTTTACTATGTTCTATGTTTACTAACAAATACTGACATATAATTGACTGACTTCAATGTATTTTCAACTATACTGAGGTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAAATAGTTGTCAAAGTGGCAAAGTATTACCATAGTGAACGAATTGATCATCCATAAGCCCCTTCAAGACTTTCTTACAATTTGGATTTACTTCTCAAGTAGTTCAGTAATGACTTTGTTTTAATACTTAATTGTTTCATCATATCTTCCAATATACATAAAACAAA]
[-] EMBL CD189467 [TGAATTAACAATGTTNTCATGACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCTGCTCATGAATTTTCAATACATTTTACTATGTTCTATGTTTACTAACAAATACTGACATATAATTGACTGACTTCAATGTATTTTCAACTATACTGAGGTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAAATAGTTGTCAAAGTGGCAAAGTATTACCATAGTGAACGAATTGATCATCCATAAGCCCCTTCAAGACTTTCTTACAATTTGGATTTACTTCTCAAGTAGTTCAGTAATGACTTTGTTTTAATACTTAATTGTTTCATCATATCTTCCAATATACATAAAACAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7898#0 ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATG 60
consensus_7898#1 ---------------------------------------TGAATTAACAATGTTNTCATG 21
* * * * * ***
consensus_7898#0 ACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACG 120
consensus_7898#1 ACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAG------------TATCCCATAAGGC 69
*** * ** * ** *** * * * ** ******* *
consensus_7898#0 TAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACC 180
consensus_7898#1 GATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATC 129
* * ** ** * ** * ** ** ** ****** * * *** *
consensus_7898#0 AGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCA 240
consensus_7898#1 CAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCT----GCTCATG 185
** * ** *** * * ** * * * *** * **
consensus_7898#0 ACCTTTCACAACATTGT-CTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAG 299
consensus_7898#1 AATTTTCAATACATTTTACTATGTTCT------ATGTTTACTAACAAATACTGACATA-- 237
* ***** ***** * ***** * ** * * * ** ** * *
consensus_7898#0 TAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGAT 359
consensus_7898#1 TAATTGACTGACTTCAA--TGTATTTTCAACTAT--------------------ACTGAG 275
*** *** ** * *** **** * * * * **
consensus_7898#0 CCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTT-GAGGACCACGTNTG 418
consensus_7898#1 GTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAA 335
** ** ** * *** * * * * ** ** * *** * ** * *
consensus_7898#0 GCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCAC 478
consensus_7898#1 ATAGTTGTCAAAGTGGCAA-AGTATTACCATAGTGAACGAATTGATCATCCAT-AAGCCC 393
* ** * * ** * * ** *** ***** * ** * * ** *
consensus_7898#0 TTTCAGTATCCCATAAGGGGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCAT 538
consensus_7898#1 CTTCAAGACTTTCTTACAATTTGGATTTA-CTTCTCAAGTAGTTCA-GTAATGACTTTGT 451
**** * * * * ****** ** * * *** * *** * *
consensus_7898#0 CTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTT 598
consensus_7898#1 TTTAATACT-TAATTGTTTCATCATATCTTCCAATATACATAAAACAAA----------- 499
* ** * * * * ** *** * ** ** * *
consensus_7898#0 CGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAA 658
consensus_7898#1 ------------------------------------------------------------
consensus_7898#0 ACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCA 718
consensus_7898#1 ------------------------------------------------------------
consensus_7898#0 TATTAGGTGACAGTAAATTCGATGTACGGG 748
consensus_7898#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||