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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence
[TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGTGGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAATTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGAAAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCCAAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGATTTGGGAATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACTGGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCATATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT]
[+] EMBL CD197570 [TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGTGGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAATTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGAAAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACA ]
[-] EMBL CD168448 [ GATGCTGAGAGACAC CCGAAAATATCGCATACACGCAAAGGGTTGGTTTCTATGGCGGACAATGGATCTGGACAGCATGGTTCTCAATTCTTCATAACTTTGGGAGATGATgctggacg ]
[+] EMBL CD168656 [ GTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCCAAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGATTTGGGAATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACTGGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCATATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT]
consensusID : consensus_7899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence
[TTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTG-ATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATTATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA]
[-] EMBL CD197295 [TTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTG ATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATTATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA]
[-] EMBL CD197283 [ TTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTAC TACGCTGAATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATGATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7899#0 TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGT 60
consensus_7899#1 ------------------------------------------------------------
consensus_7899#0 GGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAA 120
consensus_7899#1 ------------------------------------------------------------
consensus_7899#0 TTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGA 180
consensus_7899#1 ------------------------------------------------------------
consensus_7899#0 AAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACA 240
consensus_7899#1 ------------------------------------------------------------
consensus_7899#0 TCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTC 300
consensus_7899#1 -------------------------TTTGATACACCGAAAATGATTCGTTATCCTGACTC 35
***********************************
consensus_7899#0 TCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGA 360
consensus_7899#1 TCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGA 95
**************************** ******* ***********************
consensus_7899#0 TGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAA 420
consensus_7899#1 TGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAA 155
************************************************************
consensus_7899#0 AACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCC 480
consensus_7899#1 AACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAATCTCC 215
******************************************************* ****
consensus_7899#0 AAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGAT--TTGGGA 538
consensus_7899#1 A-----TCTGTATTAGGTGAG-GAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTC 269
* * * ** *** * ** * ** **** * ** *** * **
consensus_7899#0 ATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACT 598
consensus_7899#1 ATCATTATCGGTGAATTCCCAGGGAA-AATCCAAATGGACAGACCATAGGCCAA------ 322
****** ** ** ** * ** ** ** ** * * * ** **
consensus_7899#0 GGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCA 658
consensus_7899#1 -ATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACAT-AAGAAGCA 380
* ** * ** * * * * **** * ** * * **** ***
consensus_7899#0 TATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT- 711
consensus_7899#1 CCACTCACGAC--ACTAA-CCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA 431
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||