These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACACAGAAACCATTTTTTAATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCATACAGTTTTTTTAACTTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATACATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATTTATTCGTTTTTGAGACGGAGTTTCGCTTTGTCACTCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGTAGCTGGAATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA] [+] EMBL CD150583 [GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACACAGAAACCATTTTTTAATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCATACAGTTTTTTTAACTTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATACATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATTTATTCGTTTTTGAGACGGAGTTTCGCTTTGTCACTCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGTAGCTGGAATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA] consensusID : consensus_7903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [ATGACATATTTACCACCCCTCAGATATTCTTCAAATCCGTAGTAATCCCCAGACAACTATTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAAATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGAGTCTCACTATGTCACCCAGGCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAACCTCTGTCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACCATAGTTGGTCACACATG] [-] EMBL CD084707 [ATGACATATTTACCACCCCTCAGATATTCTTCAAATCCGTAGTAATCCCCAGACAACTATTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAAATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGAGTCTCACTATGTCACCCAGGCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAACCTCTGTCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACCATAGTTGGTCACACATG] consensusID : consensus_7903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGGTGATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAGNNTCAGGAAAGATACTGTGCCTGGNATGT] [+] EMBL CD110800 [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGGTGATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAGNNTCAGGAAAGATACTGTGCCTGGNATG ] [+] EMBL CD111856 [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGNTGATGGTGNGGAAGAGGTCAGCAGGNAATCATGTGAGCAAGGAACCTGTATCATGAATAAG TTCAGGAAAGATACTGTG CT GNATGT] consensusID : consensus_7903#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [GGTGAGGGAACGTACAGATAAGCCGATTGAATAGTTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAAACGCTGTGTGCCAGCACAAATTAGATCACTGACACCCATGCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCTGAGACTCCCGGGTTAAAGCTATTATTTTCGCCTGAGACTACCAAGTAGTTGGGATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC] [+] EMBL CD097736 [GGTGAGGGAACGTACAGATAAGCCGATTGAATAGTTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAAACGCTGTGTGCCAGCACAAATTAGATCACTGACACCCATGCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCTGAGACTCCCGGGTTAAAGCTATTATTTTCGCCTGAGACTACCAAGTAGTTGGGATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7903#0 --GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACAC 58 consensus_7903#3 ------------------------------------------------------------ consensus_7903#1 ATGACATATTTACCACCCCTCAGAT-ATTCTTCAAATCCGTAGTAATCCCCAGACAACTA 59 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 AGAAACCATTTTTTA--ATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCAT 116 consensus_7903#3 ------------------------------------------------------------ consensus_7903#1 TTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAA 119 consensus_7903#2 -------------------CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAA 41 consensus_7903#0 ACAGTTTTTTTAAC-TTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATAC 175 consensus_7903#3 ----------------------GGTGAGGGAACGTACAGATAAGCCGAT----TGAATAG 34 consensus_7903#1 ATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCC 179 consensus_7903#2 GCAATTCTCTAGCC-TCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGG 100 consensus_7903#0 ATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATT-TATTCGTTTTTGAG-ACGGA 233 consensus_7903#3 TTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAA-ACGCTGTGTGCCAGCACAAA 93 consensus_7903#1 TTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGA 239 consensus_7903#2 GCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTA------GAGACAAGAGACTGA 154 * * * * * consensus_7903#0 GTTTCGCTTTGTCACTCAG-GCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAA-CCT 291 consensus_7903#3 TTAGATCACTGACACCCAT-GCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCT 152 consensus_7903#1 GTCTCACTATGTCACCCAG-GCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAA-CCT 297 consensus_7903#2 GTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGA---C 211 * * ** ** * * ** ** * * * * * * consensus_7903#0 CCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGT 351 consensus_7903#3 GAGACTCCCGGGTTAAAGCTATTATTTT------CGCCTGAGA--------CTACCAAGT 198 consensus_7903#1 CTGTCTCCCAGATTCAAGCAATTCTCCT-------GCCTCAGC--------CTCCTGAGT 342 consensus_7903#2 CGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAG------TTCCCTCAGT 265 * * * ** * * * * *** consensus_7903#0 AGCTGG-AATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGA 410 consensus_7903#3 AGTTGG-GATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGA 257 consensus_7903#1 AGCTGG-GATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGA 401 consensus_7903#2 ATTTATTGATCACT-ATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGAC-AACAGGGT 323 * * ** ** * * * * * * * * * * ** * consensus_7903#0 TGGGGTTTCGCCAT-GTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCC 469 consensus_7903#3 TGGGGTTTCACCAT-ATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC----- 311 consensus_7903#1 TGGCGTTTCACCATAGTTGGTCACACATG------------------------------- 430 consensus_7903#2 GATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAG 383 ** * * * * consensus_7903#0 GCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA 511 consensus_7903#3 ------------------------------------------ consensus_7903#1 ------------------------------------------ consensus_7903#2 NNTCAGGAAAGATACTGTGCCTGGNATGT------------- 412 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||