These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1597 fasta sequence [TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTATCTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTACAAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCTCCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACAAACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATTCTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAATCATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTTCAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCATTTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTAATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATCAAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTTATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGTTGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGATTTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACCAATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTTTTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT] [+] EMBL SMU94619 [TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTATCTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTACAAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCTCCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACAAACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATTCTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAATCATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTTCAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCATTTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTAATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATCAAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTTATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGTTGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGATTTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACCAATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTTTTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAG ] [-] EMBL CD067513 [ TTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTC ] [-] EMBL AI740220 [ TTTTTTCCTCAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGT AAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT] consensusID : consensus_7910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 304 fasta sequence [AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAGAAAATTCCAATGTTATAAATACAACTAACTTGTCCACGATATTTAGTCATAATCATATCTAAAGCAATTTG-ATGTTCATCACAGGAATTCCTTAATGGTTTATTTCTC-ATTTTCAACTGGGCT] [+] EMBL CD149301 [AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAGAAAATTCCAATGTTATAAATACAACTAACTTGTCCACGATATTTAGTCATAATCATATCTAAAGCAATTTG ATGTTCATCACAGGAATTCCTTAATGGTTTATTTCTC ATTTTCAACTGGGCT] [+] EMBL CD149271 [AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAAAAAATTCCAATGTTATAAATACAACTAACTTGCTCACAATA TTAGTCATAGTCATATCTAAAGCAGTTTGAATG TCATCAAGGGAATTTCTTAATGTTTTATTT TCAATTTTCAACTGGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7910#0 TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTAT 60 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTAC 120 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCT 180 consensus_7910#1 ---------------------------------AAGCAATGATTATTACAGATTA-CTTT 26 ** **** ** *** * * * consensus_7910#0 CCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACA 240 consensus_7910#1 CCAAACAACTCTGGTCTTAAGTACGAC-TACATAAAATATTAAT-----AGGAAAGTACG 80 ****** *** * ** * * * ** * **** * ** ** ** consensus_7910#0 AACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATC 300 consensus_7910#1 AAATGTTGTTACATC---AAACTAAACGAGAAAC---GAAATAGCTGTTTCATGATTATT 134 ** ** *** *** * ** **** * * * ** **** ** consensus_7910#0 AAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAA 360 consensus_7910#1 ACAC-AAAACATATAAAGATAT-ACAGAATAGTATATGGAAACTTCAAGAAAATTCCAAT 192 * ** * *** *** ** **** * *** *** * * * * * consensus_7910#0 CCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGAT 420 consensus_7910#1 GTTATAAATACAACTAACTTGTCCA--CGATATTTAGTCATAATCATATCTAAAGCAATT 250 *** ** * * ***** ** * * * * ** * ** *** * *** * consensus_7910#0 GTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCC---TTCAACTAATTCCA 477 consensus_7910#1 TGATG----TTCATCACAGGAATTCCTTAATGGTTTATTTCTCATTTTCAACTGGGCT-- 304 ** * * ** * * * * *** ** * * ******* consensus_7910#0 TTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATG 537 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 GTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTA 597 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTG 657 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATT 717 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAAT 777 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTT 837 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCAT 897 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTA 957 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 ATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATC 1017 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTT 1077 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 ATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGT 1137 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGAT 1197 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACC 1257 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTT 1317 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTT 1377 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAAT 1437 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTT 1497 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGA 1557 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 ATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT 1597 consensus_7910#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||