cluster # 7911

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Schistosoma mansoni
cluster # 7911 cluster # 7911 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7911#0 length = 834 sequences # 5

consensus_7911#1 length = 503 sequences # 1

consensusID : consensus_7911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 834
fasta sequence

                              [CAAAGAAATTGATTTAGTTCGAGATGGTTGTTTAATTATTTCAACAGCTTCAACATAATTAGCAATCGCAGCATCATAACGAGCCGCAGTTAATGCAATACTTAAGCACATACGAGCATCCTCTTGTTGACCATCATAATATACTAATCCGCCGACTAGCTTATCACGTTTTAATAAAGGAAATCGTTCTAATGCCTGTGATTTATTAAGATAATAACTAGCTTTCAATATTTGAGCACCAGATATTAAGTCATACATTTCTATACCAGCCCAATAATACGGAACTTGCCACCATTTATATATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGCCATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTGTTCTGAAGGTTTAGGTCTCGACAGTAAACCCTTCGTCCTTCTGGCTTCATTAACTCTAGGGACAACTTCCATTAAAATTGTAGCACCAACGCCAGATATTGCTCCAATCAAAACAAGCTTTTTGCTTATTCTTCGAAAGGCGGACATCGGACTCTAAGAGCGACCTTGNAATGT]

[+] EMBL CD196004             [CAAAGAAATTGATTTAGTTCGAGATGGTTGTTTAATTATTTCAACAGCTTCAACATAATTAGCAATCGCAGCATCATAACGAGCCGCAGTTAATGCAATACTTAAGCACATACGAGCATCCTCTTGTTGACCATCATAATATACTAATCCGCCGACTAGCTTATCACGTTTTAATAAAGGAAATCGTTCTAATGCCTGTGATTTATTAAGATAATAACTAGCTTTCAATATTTGAGCACCAGATATTAAGTCATACATTTCTATACCAGCCCAATAATACGGCACTTGCCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD186985             [                                                                                              GCAATACTTAAGCACATACGAGCATCCTCTTGTTGACCATCATAATATACTAATCCACCGACTAGTTTATCACGTTTTAATAAAGGAAATCGTTCTAATGCCTGTGATTTATTAAGATAATAACTAGCTTTCAATATTTGAGCACCAGATATTAAGTCATACATTTTAATACCAGCCCAATAATACGGAACTTGCCACCATTTATATATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTA                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD096219             [                                                                                                                                                                                                                                                                                       CGGAACTTGCCACCATTTATATATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGCCATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTGTTCTGAAGGTTTAGGTCTCGACAGTAAACCCTTCGTCCTTCTGGCTTCATTAACTCTAGGGACAACTTCCATTAAAATTGTAGCACCAACGCCAGATATTGCTCCAATCAAAACAAGCTTTTTGCTTATTCTTCGAAAGGCGGACATCGGACTCTAAGAGCGACCTTGNAATGT]
[-] EMBL CD180829             [                                                                                                                                                                                                                                                                                       CGGAACTTGCCACCATTTATATATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGCCATTCGTTTAAGG                                                                                                                                                                                                                             ]
[+] EMBL CD183831             [                                                                                                                                                                                                                                                                                                            TATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGCAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGTTGCCATTCGTTTAAGGTGTT                                                                                                                                                                                                                         ]




>consensus_7911#0
CAAAGAAATTGATTTAGTTCGAGATGGTTGTTTAATTATTTCAACAGCTTCAACATAATT
AGCAATCGCAGCATCATAACGAGCCGCAGTTAATGCAATACTTAAGCACATACGAGCATC
CTCTTGTTGACCATCATAATATACTAATCCGCCGACTAGCTTATCACGTTTTAATAAAGG
AAATCGTTCTAATGCCTGTGATTTATTAAGATAATAACTAGCTTTCAATATTTGAGCACC
AGATATTAAGTCATACATTTCTATACCAGCCCAATAATACGGAACTTGCCACCATTTATA
TATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGA
ACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGC
CTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGA
AGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGC
AACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGC
CATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTG
TTCTGAAGGTTTAGGTCTCGACAGTAAACCCTTCGTCCTTCTGGCTTCATTAACTCTAGG
GACAACTTCCATTAAAATTGTAGCACCAACGCCAGATATTGCTCCAATCAAAACAAGCTT
TTTGCTTATTCTTCGAAAGGCGGACATCGGACTCTAAGAGCGACCTTGNAATGT

consensusID : consensus_7911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [GCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGCCATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTGTTCTGAAGGTTTAGGTCTCGACAGTAAAGCCTGTAAGTATAAAATGTAGTGATGAGAATATAAGCTTATTGAATAATGTGACTAGTGGTTGCTTGATCACATAAAAAGGCGAAACCAATGGTGAAATAGCAGATAAGAAGCTACGATGAAGCGTGATCAGTCACTGAATTGCTTCGTTTGTTT]

[-] EMBL CD128068             [GCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGCCATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTGTTCTGAAGGTTTAGGTCTCGACAGTAAAGCCTGTAAGTATAAAATGTAGTGATGAGAATATAAGCTTATTGAATAATGTGACTAGTGGTTGCTTGATCACATAAAAAGGCGAAACCAATGGTGAAATAGCAGATAAGAAGCTACGATGAAGCGTGATCAGTCACTGAATTGCTTCGTTTGTTT]




>consensus_7911#1
GCTATATCGATTAGATTAGAACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCA
ATGTCTAAATTAAATATAGCCTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTT
GAACGAGAAGAGGTACCCGAAGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCT
CTAGATGCAGCATCTAACGCAACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACA
TCGAAAAGTTCACCTGATGCCATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGT
TCAAAACGTTTAAACTCCTGTTCTGAAGGTTTAGGTCTCGACAGTAAAGCCTGTAAGTAT
AAAATGTAGTGATGAGAATATAAGCTTATTGAATAATGTGACTAGTGGTTGCTTGATCAC
ATAAAAAGGCGAAACCAATGGTGAAATAGCAGATAAGAAGCTACGATGAAGCGTGATCAG
TCACTGAATTGCTTCGTTTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7911#0      CAAAGAAATTGATTTAGTTCGAGATGGTTGTTTAATTATTTCAACAGCTTCAACATAATT 60
consensus_7911#1      ------------------------------------------------------------
                                                                                  

consensus_7911#0      AGCAATCGCAGCATCATAACGAGCCGCAGTTAATGCAATACTTAAGCACATACGAGCATC 120
consensus_7911#1      ------------------------------------------------------------
                                                                                  

consensus_7911#0      CTCTTGTTGACCATCATAATATACTAATCCGCCGACTAGCTTATCACGTTTTAATAAAGG 180
consensus_7911#1      ------------------------------------------------------------
                                                                                  

consensus_7911#0      AAATCGTTCTAATGCCTGTGATTTATTAAGATAATAACTAGCTTTCAATATTTGAGCACC 240
consensus_7911#1      ------------------------------------------------------------
                                                                                  

consensus_7911#0      AGATATTAAGTCATACATTTCTATACCAGCCCAATAATACGGAACTTGCCACCATTTATA 300
consensus_7911#1      ------------------------------------------------------------
                                                                                  

consensus_7911#0      TATGGGCAACATGATTGGTAATGGATAGGCTAAATGTGGAGCTATATCGATTAGATTAGA 360
consensus_7911#1      ----------------------------------------GCTATATCGATTAGATTAGA 20
                                                              ********************

consensus_7911#0      ACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGC 420
consensus_7911#1      ACGTTCACTCAGTGCCTCATTAACCATACGAAACTGTTCAATGTCTAAATTAAATATAGC 80
                      ************************************************************

consensus_7911#0      CTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGA 480
consensus_7911#1      CTTTTGTAGGTATCGAACACCACCATGAATAAGTTTGGTTGAACGAGAAGAGGTACCCGA 140
                      ************************************************************

consensus_7911#0      AGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGC 540
consensus_7911#1      AGCAAAATCTAATCTTTCAATAAGGCATGTTGATAAACCTCTAGATGCAGCATCTAACGC 200
                      ************************************************************

consensus_7911#0      AACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGC 600
consensus_7911#1      AACACCAGCACCAGTTGCCCCACCACCAATTACTAAGACATCGAAAAGTTCACCTGATGC 260
                      ************************************************************

consensus_7911#0      CATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTG 660
consensus_7911#1      CATTCGTTTAAGGTGTTCATCTCTAGTTGGCAAAGGTCGTTCAAAACGTTTAAACTCCTG 320
                      ************************************************************

consensus_7911#0      TTCTGAAGGTTTAGGTCTCGACAGTAAACCCTTCGTCCTTCTGGCTTCATTAACTCTAGG 720
consensus_7911#1      TTCTGAAGGTTTAGGTCTCGACAGTAAAGCCTGTAAGTATAAAATGTAGTGA----TGAG 376
                      **************************** ***       *      *  * *    *  *

consensus_7911#0      GACAACTTCCATTAAAATTGTAGCACCAACGCCAGATATTGCTCCAATCAAAAC---AAG 777
consensus_7911#1      AATATAAGCTTATTGAATAATGTGACTAGTGGTTGC--TTGATCACATAAAAAGGCGAAA 434
                       * *    *   *  ***  *   ** *  *   *   *** **  ** ****    ** 

consensus_7911#0      CTTTTTGCTTATTCTTCGAAAGGCGGACATCGGACTCTAAGAGCGACC-TTGNAATGT-- 834
consensus_7911#1      CCAATGGTGAAATAGCAGATAAGAAGCTACGATGAAGCGTGATCAGTCACTGAATTGCTT 494
                      *   * *   * *    ** * *  *  *           ** *   *  ** * **   

consensus_7911#0      ---------
consensus_7911#1      CGTTTGTTT 503