cluster # 7912

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Schistosoma mansoni
cluster # 7912 cluster # 7912 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7912#0 length = 828 sequences # 4

consensus_7912#1 length = 376 sequences # 2

consensusID : consensus_7912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 828
fasta sequence

                              [TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAAAAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTTGCTACTGGTGTACGCTCTGTTGCCGCATCAGGTACAAATGTCACTGCATATTTAAAGCGTCCCAATAAATATGATAACAGCGAT-ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT-CACTTCATTATTCT-GTGATAAACAATATC-GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA]

[+] EMBL CD080402             [TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAAAAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTTGCTACTGGTGTACGCTCTGTTGCCGCATCAGGTACAAATGTCACTGCATATTTAAAGCGTCCCAATAAATATGATAACAGCGAT ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTNTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTNTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTNTGTTATCTACCACTGNTTTCTTTTCTC ATGTATTTGACCTCGNTAGTGAAATATNTGNTATTGNTNTGGTCCATAANTNCTGNTCATATATACTGNACATTTCAAT AACATTACGA ]
[-] EMBL CD074494             [                                                                                                                                                   TCAGGTACAAATGTCACTGCATA TTANAGCGTCCCAATAAATATGATAACAGCGAT ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA]
[-] EMBL CD074317             [                                                                                                                                                                                       AATAAATATGATAACAGCGATNNCANAGTTAAGAAGACGTGGTAATAATAATGATAATAATANAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA]
[+] EMBL AI618989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATTATTTTCTGCACTTCATTATTCTGGTGATAAACAATATCGGGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTA                     ]




>consensus_7912#0
TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAA
AAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTT
GCTACTGGTGTACGCTCTGTTGCCGCATCAGGTACAAATGTCACTGCATATTTAAAGCGT
CCCAATAAATATGATAACAGCGATACAAAGTTAAGAAGACGTGGTAATAATAATGATAAT
AATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAA
AATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAG
AAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACA
TTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTA
ACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAA
GCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTT
CTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTA
TTTTCTCACTTCATTATTCTGTGATAAACAATATCGGACTAACTAACTTTGTTATCTACC
ACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGT
CCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA

consensusID : consensus_7912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence

                              [GAGGAGAAGAAGACAACTTCACTTACTGGCTATGAATTTTATTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAATTAAAAGATCTAATTCATACTACAAAAGATATTAGTAAAGTTGATCAAAGCATAACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATCAACTTATATTACATCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGA]

[+] EMBL CD123651             [GAGGAGAAGAAGACAACTTCACTTACTGGCTATGAATTTTATTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAATTAA                                                                                                                                                         ]
[+] EMBL CD123646             [     GAAGAAGAAAACTTCACTTACTGGCTATGAATTTTCTTTTCAGACACGTGCTGAAAGTCTTCATTCAAGTCTTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTACTTTATTGTTAGCACAATTAAAAGATCTAATTCATACTACAAAAGATATTAGTAAAGTTGATCAAAGCATAACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATCAACTTATATTACATCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGA]




>consensus_7912#1
GAGGAGAAGAAGACAACTTCACTTACTGGCTATGAATTTTATTTTCAGACACGTGCTGAA
CGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACA
GCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTC
ACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAATTAAAAGATCTAATTCATACT
ACAAAAGATATTAGTAAAGTTGATCAAAGCATAACTTCAATACATGATGATTCGAATATT
AGTAATAATAAAAATCAACTTATATTACATCGTCTAACAATTCATAAACTACTAAGTGAA
GAATTGGATTCTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7912#0      TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAA 60
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      AAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTT 120
consensus_7912#1      -----------------GAGGAGAAGAAGACAAC--TTCACTTACTGGCTATGAATTTTA 41
                                        *  ** ***  *****   *     * *    * *** * * 

consensus_7912#0      GCTACTGGTGTACGCTCTGT-TGCCGCATCAGGTACAAATGTCACTGCA---TATTTAAA 176
consensus_7912#1      TTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAA 101
                        * * *      ***     **     *** ***  ** ***    **   ********

consensus_7912#0      GCGTCCCAATAAATATGATAACAGCGATACAAAG----TTAAGAAGACGTGGTAATAATA 232
consensus_7912#1      ACGTATTCATCAAT-TAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACG 160
                       ***    ** *** * * * * *  *    * *    * **  * **   **    *  

consensus_7912#0      ATGATAATAATAAAACTAATGATGTTTTAAACTATCA-TGAATCTCGACATGAAGAAAAT 291
consensus_7912#1      CTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAAT 220
                       ***    * * *** *     ****** *   * ** **    *     * *  * ***

consensus_7912#0      TTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTT 351
consensus_7912#1      T----AAAAGATCTAATTCATAC---TACAAAAGATATTAGTAAAGTTGATCAAAGCATA 273
                      *    * ** **  * * * ***   *  **  ** * *   * * *  *****    * 

consensus_7912#0      ACGCAAGAGAAAGATGAACTGCAT-CAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTT 410
consensus_7912#1      ACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATC---AACTTATATTACAT 330
                      **   *    * *****   * **   ****   *  ******    *  *   * ** *

consensus_7912#0      AAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGA 470
consensus_7912#1      CG-TCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCT-TTGA------------ 376
                          * **** *     ***  ****  *** **** **  *   ***            

consensus_7912#0      CTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAAT 530
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      CAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTC 590
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      TCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTT 650
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      CTTTACATTATTTTCTCACTTCATTATTCTGTGATAAACAATATCGGACTAACTAACTTT 710
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      GTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTA 770
consensus_7912#1      ------------------------------------------------------------
                                                                                  

consensus_7912#0      TTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA 828
consensus_7912#1      ----------------------------------------------------------