These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCCCTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAAAATCCCTTAGAAAAGAAAGC] [+] EMBL CD073814 [AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCCCTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAAAATCCCTTAGAAAAGAAAGC] consensusID : consensus_7913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 428 fasta sequence [ATTATGCANTAGTAGCAATGAAAAGTACCAGTATATCNTCAAATGTGGCCCTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGCCTCGTGCCGAAT] [-] EMBL CD077479 [ATTATGCANTAGTAGCAATGAAAAGTACCAGTATATCNTCAAATGTGGCCCTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGCCTCGTGCCGAAT] [-] EMBL CD180745 [ GTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAA ] [-] EMBL CD147610 [ ACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTC ] [+] EMBL CD178070 [ CGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAA ] [-] EMBL CD178074 [ GTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7913#0 AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCC 60 consensus_7913#1 ----ATTATG-CANTAGTAGC--AATGAAAAGTACCAGTATAT-CNTCAAA-TGT-GGCC 50 ** *** ** ***** *********** ******** * ***** *** **** consensus_7913#0 CTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCA 120 consensus_7913#1 CTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCA 110 ********* ********** * ************************************* consensus_7913#0 TACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTC 180 consensus_7913#1 TACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTC 170 ************************************************************ consensus_7913#0 CGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTC 240 consensus_7913#1 CGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTC 230 ************************************************************ consensus_7913#0 AACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGA 300 consensus_7913#1 AACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGA 290 ************************************************************ consensus_7913#0 GCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTA 360 consensus_7913#1 GCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTA 350 ************************************************************ consensus_7913#0 TGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACT 420 consensus_7913#1 TGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACT 410 ************************************************************ consensus_7913#0 CACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAA 480 consensus_7913#1 CACCG-----CCTCGTGCCGAAT------------------------------------- 428 ***** * * * ** consensus_7913#0 AATCCCTTAGAAAAGAAAGC 500 consensus_7913#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||