These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 338 fasta sequence [TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC-AAATTAA--TTTTTTTTTGTAATCTTTATTTC-TTCAATAAAATAATTCATTAACTGTTCAAAAAAGGGGGG] [+] EMBL CD133769 [TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCATTAACTGTTCAAAAAAGGGGGG] [+] EMBL CD133715 [TTCAGACACTACGAATATTTCACACCCCCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT ] [+] EMBL CD185496 [TTCAGACACTACGAATATTTCACACCCTCCGGCAGGTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA TTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT ] [-] EMBL SMAA69912 [ ACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAACAAAATTAATTTTTTTTTTTGTAATCTTTATTTCTTTCAATAAAATAATTCATTt ] [+] EMBL SMAA17937 [ ACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAAT TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT ] consensusID : consensus_7915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [ACCTCATAACGATAATACTAAACGTATTATCCATCCAACCTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTATTTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA] [+] EMBL AW330538 [ACCTCATAACGATAATACTAAACGTATTATCCATCCAACCTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTATTTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7915#0 TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGT 60 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 AAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGA 120 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 ACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAA 180 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 GCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAAC-AAC 239 consensus_7915#1 ---------------------ACCTCATAACGATAATACTAAACGTATTATCCATCCAAC 39 ********************************* * *** consensus_7915#0 CTTTGAAGTG-AAAAATTCTATTTTCTTAACAAATTAATTTTTTTTT--GTAATCTTTAT 296 consensus_7915#1 CTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTAT 99 ********** *************************** **** *** *********** consensus_7915#0 TTCTTCAATAAAATAATTCATTAACT--GTTCAAAAAAGGGGGG 338 consensus_7915#1 TTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA------ 137 *** *** ***************** ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||