cluster # 7915

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Schistosoma mansoni
cluster # 7915 cluster # 7915 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7915#0 length = 338 sequences # 5

consensus_7915#1 length = 137 sequences # 1

consensusID : consensus_7915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 338
fasta sequence

                              [TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC-AAATTAA--TTTTTTTTTGTAATCTTTATTTC-TTCAATAAAATAATTCATTAACTGTTCAAAAAAGGGGGG]

[+] EMBL CD133769             [TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA  TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCATTAACTGTTCAAAAAAGGGGGG]
[+] EMBL CD133715             [TTCAGACACTACGAATATTTCACACCCCCCGGCAGTTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA  TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT                     ]
[+] EMBL CD185496             [TTCAGACACTACGAATATTTCACACCCTCCGGCAGGTAAAGCCGGAAAGATGAGAATTGTAAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAA    TTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT                     ]
[-] EMBL SMAA69912            [                                                                                                                  ACACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAACAAAATTAATTTTTTTTTTTGTAATCTTTATTTCTTTCAATAAAATAATTCATTt                   ]
[+] EMBL SMAA17937            [                                                                                                                    ACGAACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAAGCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACCTTTGAAGTGAAAAATTCTATTTTCTTAAC AAATTAAT TTTTTTTTTGTAATCTTTATTTC TTCAATAAAATAATTCAT                     ]




>consensus_7915#0
TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGT
AAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGA
ACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAA
GCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAACAACC
TTTGAAGTGAAAAATTCTATTTTCTTAACAAATTAATTTTTTTTTGTAATCTTTATTTCT
TCAATAAAATAATTCATTAACTGTTCAAAAAAGGGGGG

consensusID : consensus_7915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [ACCTCATAACGATAATACTAAACGTATTATCCATCCAACCTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTATTTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA]

[+] EMBL AW330538             [ACCTCATAACGATAATACTAAACGTATTATCCATCCAACCTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTATTTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA]




>consensus_7915#1
ACCTCATAACGATAATACTAAACGTATTATCCATCCAACCTTTGAAGTGGAAAAATTCTA
TTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTATTTCCTCACTAAAATAATTCAT
TAACCTGGTTCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7915#0      TTCAGACACTACGAATATTTCACACCCTCCGGCAGTTAAAGCCGGAAAGATGAGAATTGT 60
consensus_7915#1      ------------------------------------------------------------
                                                                                  

consensus_7915#0      AAAACATGTAAAACATGATGCAACAGTTGAAGTCAGGTGCGAAGAGGATTCTCCACACGA 120
consensus_7915#1      ------------------------------------------------------------
                                                                                  

consensus_7915#0      ACTGCTTACTAAGGAGGAACTTGAATATCACGACAGGTGTATCAAAGCTTATCATGATAA 180
consensus_7915#1      ------------------------------------------------------------
                                                                                  

consensus_7915#0      GCCAATGCCAACAGTTACTAAACCTCATAACGATAATACTAAACGTATTATCCAAC-AAC 239
consensus_7915#1      ---------------------ACCTCATAACGATAATACTAAACGTATTATCCATCCAAC 39
                                           ********************************* * ***

consensus_7915#0      CTTTGAAGTG-AAAAATTCTATTTTCTTAACAAATTAATTTTTTTTT--GTAATCTTTAT 296
consensus_7915#1      CTTTGAAGTGGAAAAATTCTATTTTCTTAACAAATTAAATTTTATTTTGGTAATCTTTAT 99
                      ********** *************************** **** ***  ***********

consensus_7915#0      TTCTTCAATAAAATAATTCATTAACT--GTTCAAAAAAGGGGGG 338
consensus_7915#1      TTCCTCACTAAAATAATTCATTAACCTGGTTCAAAAAA------ 137
                      *** *** *****************   **********