These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence [ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATGATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATGATCTA-ATTAATAAATGTTGCA-AAGATAAATGTTCAACCGT-TTGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGAT-TGTTAGTCA-ACTATATGAAACTGCTATGAAGGGATTAAATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGGACTAGTCGTTTAACTATGCCATGTGAAGACAGTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAATTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAATATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG] [+] EMBL CD083585 [ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATGATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATGATCTA ATTAATAAATGTTGCA AAGATAAATGTTCAACCGT TTGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGAT TGTTAGTCA ACTATATGAAACTGCTATGAAGGGATTAAATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGG ] [+] EMBL CD163312 [ TCTACATTAATAAATGTTGCATAAGATAAATG TCAACCGTGATGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGATCTGTTAGTCACACTATATGAAACTGCTATGAAGGGATTAGATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGGACTAGTCGTTTAACTATGCCATGTGAAGACAGTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTT ] [+] EMBL CD126896 [ ATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAATTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAATATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG] consensusID : consensus_7926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence [AGGAGACATCGAAGATTTTTGTTTTAATATACAATGGTTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGAT] [+] EMBL CD082095 [AGGAGACATCGAAGATTTTTGTTTTAATATACAATGGTTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGA ] [-] EMBL CD075710 [ GAAATCGAAGATTTTTGTTTTAATATACAATGGTGACATTCATCGCCAAAATAATTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGAT] consensusID : consensus_7926#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [TCAGTGATTGGAGACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGAACTACTCTTTATCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTTACATACATTTTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACATTATTTTAGTCCATTGCGATTCAAATTTTTATATTCATCTCTCCCTGCTAGTGTTATATTACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT] [+] EMBL CD166946 [TCAGTGATTGGAGACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGAACTACTCTTTATCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTTACATACATTTTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACATTATTTTAGTCCATTGCGATTCAAATTTTTATATTCATCTCTCCCTGCTAGTGTTATATTACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7926#0 ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATG 60 consensus_7926#1 ------------------------------------------------------------ consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 ATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATG 120 consensus_7926#1 ------------------------------------------------------------ consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 ATCTAATTAATAAATGTTGCAAAGATAAATGTTCAACCGTTTGTATGTTCACTGATAGTG 180 consensus_7926#1 ------------------------------------------------------------ consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 AATCACTGGAATGTCAACGGATTGTTAGTCAACTATATGAAACTGCTATGAAGGGATTAA 240 consensus_7926#1 --------------------------AGGAGAC-ATCGAAGATTTTTGTTTTAATATACA 33 consensus_7926#2 ---------------------------------------------------------TCA 3 * consensus_7926#0 ATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTA 300 consensus_7926#1 ATGG-TTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCA 92 consensus_7926#2 GTGATTGGAG---ACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGA 60 ** * * * ** * * consensus_7926#0 ATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTA 360 consensus_7926#1 TGTAATTATTT-TGGCGATGAATGGTTTGTGGATAATTTAAATCTGAC---GACCATATC 148 consensus_7926#2 ACTACTCTTTA-TCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTT---ACATACATT 116 * * ** * * * * **** * * * * * consensus_7926#0 TTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATG 420 consensus_7926#1 TCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGAT-CGGCGGATATT 207 consensus_7926#2 TTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACA 176 * * * * * * * * * * ** consensus_7926#0 CTAATTCTTTACTACGTCATA-ATCGGACTAGTCGTTTA--ACTATGCCATGTGAAGACA 477 consensus_7926#1 GGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGAC 267 consensus_7926#2 TTA---TTTTAGTCCATTGCGATTCAAATTT-TTATATTCATCTCTCCC---TGCTAGTG 229 * *** ** * * * ** * * ** consensus_7926#0 GTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGAC 537 consensus_7926#1 ATATGGTGCCACG-----AGATAAACCTGCTG-CAACATTTCACATGATTAGT---AGGC 318 consensus_7926#2 TTATATT-----------------ACCTGCTG-CAACATTTCACATGATTAGT---AGGC 268 ** * * * * * ** * ** * * ** * consensus_7926#0 TTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAA 597 consensus_7926#1 TC-ATTCACT-------TCGAACCTTT------------TTAATATGTAGTGGATTC--- 355 consensus_7926#2 TC-ATTCACT-------TCGAACCTTT------------TTAATATGTAGTGGATTC--- 305 * *** ** * * * *** **** * * * *** consensus_7926#0 TTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAA 657 consensus_7926#1 -TCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTT 414 consensus_7926#2 -TCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT-------- 356 * ** * * *** * *** * *** **** ** **** * consensus_7926#0 TATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATA 717 consensus_7926#1 TGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGT-ATTTGTAGTTCTGGAAAA 473 consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 ATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTA 777 consensus_7926#1 ATTGAAA----ATTATCGTG-CTTTGTATTT-TAATGCCCAAATCTTA--AAATATTGTG 525 consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 CCAAACAGATCGGCGGATATTGGAAATTGTTAT-CAGCCAATGTATCGAGTTTGGTGTAT 836 consensus_7926#1 CCACTTTGATTT-----TATTTGTCTGTTTTATATAATCGAT------------------ 562 consensus_7926#2 ------------------------------------------------------------ consensus_7926#0 ACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG 882 consensus_7926#1 ---------------------------------------------- consensus_7926#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||