These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence [GTTTATTGTATATGAAGAAACTAAAATGACTACTAATGGCTAAATAAGTAGTTTAATAAAAATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAAAAAACTGTTAAAACACACATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAATGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTATACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTATTGAGATGAATCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATAATGCAT] [+] EMBL CD114813 [GTTTATTGTATATGAAGAAACTAAAATGACTACTAATGGCTAAATAAGTAGTTTAATAAAAATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAAAAAACTGTTAAAACACACATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTC ] [-] EMBL CD140104 [ cTGCAGAAGTATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAATGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTATACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTATTGAGATGAATCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATAATGCAT] consensusID : consensus_7928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAATATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTCATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTAGCTTTGGTGATTATATGTTGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACTAACAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACAAATAAATCACTTGATATTATCAATACTTC] [+] EMBL BF936798 [TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAATATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTCATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTAGCTTTGGTGATTATATGTTGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACTAACAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACAAATAAATCACTTGATATTATCAATACTTC] consensusID : consensus_7928#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTATAACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAGAAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAATACGTTTCCCCTTTTGTACTCGAACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTGTGCCAGTACACCGTGTTCTTACTTCAGAGCCACTAACCGGTCCTAACTGTTGTGTTGTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTAGTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTATACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCATTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATCCACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTGCNTCTGTTCCACGATTTGAAGA] [+] EMBL CD179111 [CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTATAACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAGAAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAATACGTTTCCCCTTTTGTACTCGAACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTGTGCCAGTACACCGTGTTCTTACTTCAGAGCCACTAACCGGTCCTAACTGTTGTGTTGTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTAGTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTATACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCATTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATCCACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTGCNTCTGTTCCACGATTTGAAGA] consensusID : consensus_7928#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [TTTTTTTTTTTTTTTTACTGGCACAACAAATATATTTTTGAAATTGAAAGACGCTGTCCGAGCACAAAAGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGGCTTGTTCCTCTTCTTCCAGTGCATTTACTCTTTGTTGCCCACTCGTGGAAGAGAATAGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCTTTTCAAGGGCTACTGCCGGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATACAAAACAACCTTGCTAAAAAAGCGCTTACCGGAATTAATATCTCA] [+] EMBL AI394973 [TTTTTTTTTTTTTTTTACTGGCACAACAAATATATTTTTGAAATTGAAAGACGCTGTCCGAGCACAAAAGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGGCTTGTTCCTCTTCTTCCAGTGCATTTACTCTTTGTTGCCCACTCGTGGAAGAGAATAGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCTTTTCAAGGGCTACTGCCGGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATACAAAACAACCTTGCTAAAAAAGCGCTTACCGGAATTAATATCTCA] consensusID : consensus_7928#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TGTTGTGGGAAAGCTACCAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTGTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCCCCAAATGC] [-] EMBL CD068986 [TGTTGTGGGAAAGCTACCAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTGTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCCCCAAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7928#1 TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAAT 60 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 ------------------------------------------------------------ consensus_7928#2 ------------------------------------------------------------ consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 ATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTC 120 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 -------------------------------------------------------GTTTA 5 consensus_7928#2 ------------------------------------------------------------ consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 ATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTA 180 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 TTGTATATGAAGAAACTAAA-----ATGACTACTAATGGCTAAATAAGTAGTTTAATAAA 60 consensus_7928#2 ------------------------------------------------------------ consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 GCTTTGGTGATTATATGT-TGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACT 239 consensus_7928#4 ---------------------------------------------TGTTGTGGGAAAGCT 15 consensus_7928#0 AATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAA-AAAACT 119 consensus_7928#2 ----CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTAT 56 consensus_7928#3 --------------------------------------------TTTTTTTTTTTTTTTT 16 * * consensus_7928#1 AACAAATAGAGAAATGTATCATTGTTTAACTT------TAATTTTCTATCTCATCACAAA 293 consensus_7928#4 ACCAAATAGAGAAATGTATCATTGTTTAACTT------TAATTTTGTATCTCATCACAAA 69 consensus_7928#0 GTTAAA-ACACACATGTATCATTGTTTAACTT------TAATTTTCTATCTCATCACAAA 172 consensus_7928#2 AACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAG 116 consensus_7928#3 ACTGGCACAACAAATATATTTTTG---AAATTG-----AAAGACGCTGTCCGAGCACAAA 68 * ** *** * ** * ** * * ** consensus_7928#1 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 347 consensus_7928#4 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 123 consensus_7928#0 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 226 consensus_7928#2 AAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAA 176 consensus_7928#3 AGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGG 128 * * * * * * consensus_7928#1 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 407 consensus_7928#4 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 183 consensus_7928#0 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 286 consensus_7928#2 TACGTTTCCCCTTTTGTACTCGA-ACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTG 235 consensus_7928#3 CTTGTTCCTCTTCTTCCAGTGCA----TTTACTCTTTGTTGCCCACTCGTGGAAGAGAAT 184 * * * * * * * * * * * * consensus_7928#1 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTG 467 consensus_7928#4 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCC---CCAAATGC-------- 232 consensus_7928#0 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTG 346 consensus_7928#2 TGCCAGTACACCGTGTTCTTACTTCAGA-GCCACTA--ACCGGTCCTAACTGTTG-TGTT 291 consensus_7928#3 AGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCT-TTTCAAGGGCTACTGCC 243 * * * * ** consensus_7928#1 GATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAA 527 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 GATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAA 406 consensus_7928#2 GTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTA 351 consensus_7928#3 GGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATAC 303 consensus_7928#1 TATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCT 587 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 TGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTA 466 consensus_7928#2 GTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTA 411 consensus_7928#3 AAAACA---ACCTTGCTAAAAAAGCGCT--TACCGGAATTAATATCTCA----------- 347 consensus_7928#1 CAC------GTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACA 641 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 TACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTAT-TGAGATGAATCATT 525 consensus_7928#2 TACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCA 471 consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 AATAAATCACTTGATATTATCAATACTTC------------------------------- 670 consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 --TAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAA 583 consensus_7928#2 TTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATC 531 consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 ------------------------------------------------------------ consensus_7928#4 ------------------------------------------------------------ consensus_7928#0 ATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCT 643 consensus_7928#2 CACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTG 591 consensus_7928#3 ------------------------------------------------------------ consensus_7928#1 --------------------------- consensus_7928#4 --------------------------- consensus_7928#0 TCTTCAGATGAAGTGACCATAATGCAT 670 consensus_7928#2 CNTCTGTTCCACGATTTGAAGA----- 613 consensus_7928#3 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||