cluster # 7930

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Schistosoma mansoni
cluster # 7930 cluster # 7930 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7930#0 length = 914 sequences # 4

consensus_7930#1 length = 316 sequences # 1
consensus_7930#2 length = 136 sequences # 1

consensusID : consensus_7930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 914
fasta sequence

                              [CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATTGATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGATGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAATAGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCTAATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTCAAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTTGCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG-TTTGTGGATTTAAAACT-AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTAGTGGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTGCTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCTTGAAATTCCAATGTAAATTAAAGAAAGAATTCAAATGATTCGTAGAAATAGTCATTCATAAAACATCTTGATCTA]

[+] EMBL CD185408             [CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATTGATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGATGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAATAGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCTAATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTCAAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTTGCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACCGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAAGAACTACCACAGAA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD187827             [                                                                                                                                                                                                                                                                                                                                                                                                            ACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG TTTGTGGATTTAAAACT AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTAGTG                                                                                                                                                                                                ]
[+] EMBL CD072193             [                                                                                                                                                                                                                                                                                                                                                                                                                ACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTTGTGGATTT AAACTAAACA TTCTTTGTGTTaan                                                                                                                                                                                                                                                ]
[-] EMBL CD098014             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG TTTGTGGATTTAAAACT AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTGCTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCTTGAAATTCCAATGTAAATTAAAGAAAGAATTCAAATGATTCGTAGAAATAGTCATTCATAAAACATCTTGATCTA]




>consensus_7930#0
CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATT
GATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGA
TGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAAT
AGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCT
AATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTC
AAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTT
GCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCC
ATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTAC
TGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATT
AGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTG
ATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAACTAACAT
TTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTAG
TGGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTGC
TAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCTT
GAAATTCCAATGTAAATTAAAGAAAGAATTCAAATGATTCGTAGAAATAGTCATTCATAA
AACATCTTGATCTA

consensusID : consensus_7930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [GTGCCACCTGTAGTTATTGTATTTGTTGAATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAACTAACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGTTCTTTTTCTCTAAATCTTCTTTGATTTGATTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGTTCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT]

[-] EMBL CD184622             [GTGCCACCTGTAGTTATTGTATTTGTTGAATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAACTAACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGTTCTTTTTCTCTAAATCTTCTTTGATTTGATTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGTTCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT]




>consensus_7930#1
GTGCCACCTGTAGTTATTGTATTTGTTGAATGATGTGATGAATATTGATCACTTAATACA
TCACCAGTTTGTGGATTTAAAACTAACATTTCTTGTTGTTTAATTAAACCAGCTTGATGA
TGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGTTCTTTTTCTCT
AAATCTTCTTTGATTTGATTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTT
AAACATTCCATATTTTGTTCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATT
TCTTGATCCAATTCTT

consensusID : consensus_7930#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [TACCGCATAATTAGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTGATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACATCTT]

[+] EMBL CD199896             [TACCGCATAATTAGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTGATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACATCTT]




>consensus_7930#2
TACCGCATAATTAGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTAT
TGTATGTGCTTGATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATT
TAAAACATAACATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7930#0      CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATT 60
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      GATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGA 120
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      TGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAAT 180
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      AGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCT 240
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      AATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTC 300
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      AAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTT 360
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      GCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCC 420
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      ATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTAC 480
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      TGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATT 540
consensus_7930#2      ------------------------------------------------TACCGCATAATT 12
consensus_7930#1      ------------------------------------------------------------
                                                                                  

consensus_7930#0      AGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTG 600
consensus_7930#2      AGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTG 72
consensus_7930#1      -------------------------------GTGCCACCTGTAGTTATTGTATTTGTTGA 29
                                                     *********** ********** ** *  

consensus_7930#0      ATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAAC-TAACA 659
consensus_7930#2      ATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACA 132
consensus_7930#1      ATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAAC-TAACA 88
                      ********** ************************** **************** *****

consensus_7930#0      TTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTA 719
consensus_7930#2      TCTT-------------------------------------------------------- 136
consensus_7930#1      TTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTG 148
                      * *                                                         

consensus_7930#0      GTGGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTG 779
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      GTTGAAGGGAACCAATCACGTTCTTT--TTCTCTAAATCTTCTTTGAT--------TTGA 198
                                                                                  

consensus_7930#0      CTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCT 839
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      TTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGT 258
                                                                                  

consensus_7930#0      TGAAATTCCAATGTAAATTAAAGAAAG--AATTCAAATGATTCGTAGAAATAGTCATTCA 897
consensus_7930#2      ------------------------------------------------------------
consensus_7930#1      TCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT-- 316
                                                                                  

consensus_7930#0      TAAAACATCTTGATCTA 914
consensus_7930#2      -----------------
consensus_7930#1      -----------------