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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAATGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATGACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTAGATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCTGAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCACCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGAAGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGTGTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGTGTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGATCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT]
[+] EMBL CD061206 [GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAATGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATGACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTAGATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCTGAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCACCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTA ]
[+] EMBL CD171512 [ GTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCATCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGAAGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGTGTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGTGTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGATCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT]
consensusID : consensus_7936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCTGGCTCGAGGTCACATTCAGTAGACTAAAGTTGTATGATCTACATCATTGTGTATTTTTACCATATAGACTGGAGGATGTTTTTTTTCAAATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGACAGTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAACCAACACATTTGAGTGAAAAATACGAGTTCAGATAACAAGATTGAAATTACATCAGATGTTGTCCAAACTAGGACCTGAAAAAATACATACCCAATTAGCTATGTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAAAAATGAGGTATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTAACCAGGTCTGTTGAAAGATATCAACTCACTGAAGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTGCTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCGCACTACTGANGAG]
[+] EMBL CD082248 [CCTGGCTCGAGGTCACATTCAGTAGACTAAAGTTGTATGATCTACATCATTGTGTATTTTTACCATATAGACTGGAGGATGTTTTTTTTCAAATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGACAGTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAACCAACACATTTGAGTGAAAAATACGAGTTCAGATAACAAGATTGAAATTACATCAGATGTTGTCCAAACTAGGACCTGAAAAAATACATACCCAATTAGCTATGTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAAAAATGAGGTATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTAACCAGGTCTGTTGAAAGATATCAACTCACTGAAGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTGCTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCGCACTACTGANGAG]
consensusID : consensus_7936#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[TATCTTAATCTTCACATCCATCATTCCCGATTCGTTTATGGTAATTACCCTGATAACATCCCTCTTATTACGTATTATATTTACACAACAATATTACTATTATTACGATTCCTATTATCATCATTACCTCAATTGAAAAAATGAAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAATCATACTGACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGTAATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACCTGCCTCAATTTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAGACAACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCACTCCTCAGCAGTGCGCATCCACGATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAGTCT]
[+] EMBL CD185272 [TATCTTAATCTTCACATCCATCATTCCCGATTCGTTTATGGTAATTACCCTGATAACATCCCTCTTATTACGTATTATATTTACACAACAATATTACTATTATTACGATTCCTATTATCATCATTACCTCAATTGAAAAAATGAAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAATCATACTGACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGTAATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACCTGCCTCAATTTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAGACAACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCACTCCTCAGCAGTGCGCATCCACGATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAGTCT]
consensusID : consensus_7936#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[AATGAATTAAACTCCAATACTGAGGAGGATATAACCGATTATGAACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGATATTCGCAGAGGGAACAGTCACGATTGATACAATTGGTTATTTTGCAAATTAACTGTTTACTGTATGGTTGTCAGATTTTAGTGAGATAGTCTGTACCTTTCGTGCCAAATACATTCAATTGTCCCCACCCGTGTACTTTGTTCATTACAATACTACTAATGAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTTTTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCAGATCTAAAATGGACATATGTCCACTTCCTAT]
[+] EMBL CD089444 [AATGAATTAAACTCCAATACTGAGGAGGATATAACCGATTATGAACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGATATTCGCAGAGGGAACAGTCACGATTGATACAATTGGTTATTTTGCAAATTAACTGTTTACTGTATGGTTGTCAGATTTTAGTGAGATAGTCTGTACCTTTCGTGCCAAATACATTCAATTGTCCCCACCCGTGTACTTTGTTCATTACAATACTACTAATGAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTTTTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCAGATCTAAAATGGACATATGTCCACTTCCTAT]
consensusID : consensus_7936#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[GCCGAGCACAATGAAGATCAAGATAGTTGCTCCACCTGAGCGTAAATATTCCGTTTGGATTGGTGGTTCTATTTTGGCGTCATTGTCTACACTCCAACAGATGTGGATTTCCAAACAAGAATATGATGAATCTGGTCCGGGTATTGTTCACCGTAAATGCTTCTAAGTTATATTGTGAGGCAAATAATTATGTAATATTTATTCGTAATCTTGTTGTGCAATAAAACCCTGAACATAACTTATCTTTGACCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL CD134486 [GCCGAGCACAATGAAGATCAAGATAGTTGCTCCACCTGAGCGTAAATATTCCGTTTGGATTGGTGGTTCTATTTTGGCGTCATTGTCTACACTCCAACAGATGTGGATTTCCAAACAAGAATATGATGAATCTGGTCCGGGTATTGTTCACCGTAAATGCTTCTAAGTTATATTGTGAGGCAAATAATTATGTAATATTTATTCGTAATCTTGTTGTGCAATAAAACCCTGAACATAACTTATCTTTGACCCCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7936#3 ------------------------------------------------------------
consensus_7936#4 ------------------------------------------------------------
consensus_7936#1 ----------------------------CCTGGCTCGAGGTCACATTCAGTAGACTAAAG 32
consensus_7936#2 ------------------------------TATCTTAATCTTCACATCCATCATTCCCGA 30
consensus_7936#0 GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAA 60
consensus_7936#3 ----------------AATGAATTAAACTCCAATAC-TGAGGAGGATATAACCGATTATG 43
consensus_7936#4 ------------------------------------------------------------
consensus_7936#1 TTGTATGATCTACATCATTGTGTATTTTTACCATAT-AGACTGGAGGATGTTTTTTTTCA 91
consensus_7936#2 TTCGTTTATGGTAATTACCCTGATAACATCCCTCTT-ATTACGTATTATATTTACACAAC 89
consensus_7936#0 TGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATG 120
consensus_7936#3 AACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGAT------ 97
consensus_7936#4 ------------------------------------------------------------
consensus_7936#1 AATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGAC-A 150
consensus_7936#2 AATATTACTATTATTACGATTCCT-ATTATCATCATTACCTCAATTGAAAAAAT-----G 143
consensus_7936#0 ACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTA 180
consensus_7936#3 ATTCGCAGAGGGAACAGTCACGATT-GATACAATTGGTTATTTTGCAA-ATTAA----CT 151
consensus_7936#4 ------GCCGAGCACAATGAAGATC-AAGATAGTTGCTCCACCTGAGC-GTAAA----TA 48
consensus_7936#1 GTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAAC--CA 208
consensus_7936#2 AAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAA--TCATAC--TG 199
consensus_7936#0 GATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCT 240
* * * *
consensus_7936#3 GTTTACT--GTATGGTTGTCAGATTTT--AG-TGAGATAGTCT-GTACCTTT-----CGT 200
consensus_7936#4 TTCCGTTTGGATTGGTGGTTCTATTTT--GG-CGTCATTGTCT-ACACTCCAACAGATGT 104
consensus_7936#1 ACACATTTGAGTGAAAAATACGAGTTC--AGATAACAAGATTG-AAATTACATCAGATGT 265
consensus_7936#2 ACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGT 259
consensus_7936#0 GAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGT 300
* * **
consensus_7936#3 G-----CCAAATAC--ATTCA--ATTGTC--CCCACCCGTGTACTTTGTTCATTACAA-T 248
consensus_7936#4 GGATTTCCAAACAAGAATATG--ATGAAT--CTGGTCCGGGTA--TTGTTCACCGTAAAT 158
consensus_7936#1 TG---TCCAAACTAGGACCTG--AAAAAATACATACCCAATTAGCTATGTCATTATATAT 320
consensus_7936#2 AATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACC 319
consensus_7936#0 GTCCACCTTGACGATTGAGGATGGTATATT-CGAGGTGAAGTCTACTGCTGGTGATACAC 359
* * * * *
consensus_7936#3 ACTACTAA--T-GAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTT 305
consensus_7936#4 GCTTCTAAG-T-TATATTGTGAGGCAAATAATTATGT-AATATTTATTCGT-AATCTTGT 214
consensus_7936#1 ATATATATA-TATATATATATATATATATATATATATATATATATATATATGAAAAATGA 379
consensus_7936#2 TGCCTCAAT-TTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAG 378
consensus_7936#0 ACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGA 419
* * * *
consensus_7936#3 TTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCA----GATCTAA--AATGGACATAT 359
consensus_7936#4 T---GTGCAATAAAACCCTGAACATAACTTATCTTT----GACCCCA--AAAAAAAAAAA 265
consensus_7936#1 GG-TATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTA--ACCAGGTCTGT 436
consensus_7936#2 AC--AACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCAC 436
consensus_7936#0 AGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGT 479
* *
consensus_7936#3 GTCCACTTCCTAT----------------------------------------------- 372
consensus_7936#4 AAAAAA------------------------------------------------------ 271
consensus_7936#1 TGAAAGATATCAACTCACTGA-AGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGG 495
consensus_7936#2 TCCTCAGCAGTGCGCATCCAC-GATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAG 495
consensus_7936#0 GTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGT 539
consensus_7936#3 ------------------------------------------------------------
consensus_7936#4 ------------------------------------------------------------
consensus_7936#1 TTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTG 555
consensus_7936#2 TCT--------------------------------------------------------- 498
consensus_7936#0 GTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGA 599
consensus_7936#3 ------------------------------------------------------------
consensus_7936#4 ------------------------------------------------------------
consensus_7936#1 CTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCG 615
consensus_7936#2 ------------------------------------------------------------
consensus_7936#0 TCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT-------------- 645
consensus_7936#3 -------------
consensus_7936#4 -------------
consensus_7936#1 CACTACTGANGAG 628
consensus_7936#2 -------------
consensus_7936#0 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||