cluster # 7941

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Schistosoma mansoni
cluster # 7941 cluster # 7941 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7941#0 length = 545 sequences # 4

consensus_7941#1 length = 499 sequences # 1
consensus_7941#2 length = 366 sequences # 1

consensusID : consensus_7941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 545
fasta sequence

                              [TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT-GGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACTTGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGATAATCAGTCAA]

[+] EMBL CD069737             [TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAA TTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCt                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD069702             [            gGTTTCAAAGGCAATTAATCGACTGATAAATGTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCC                                                                                                       ]
[+] EMBL CD181247             [                                                                              TANTCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAATTTTATCCTCTCACCTTCAGTCAC                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD161276             [                                                                                                                              ATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACTTGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGATAATCAGTCAA]




>consensus_7941#0
TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGC
ATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATG
TGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAG
GTTAGTATCACTTGTTACTGTTGGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAA
TCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAAT
AAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTAC
TGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCT
ACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACTTGCATC
ATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGATAATCA
GTCAA

consensusID : consensus_7941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [ACTGTCTTTACACCGAATGCCATGCCAATCCATACCTTACGTGGTCGTCAACATTCTGATGTACAGAAAAAGTCATCAGATAATACTAAGAATTGTACAGATATAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATCCATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTTTGTCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTCTTGGACAATATCTTCATTCTGCTGAAGCTGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGATCA]

[+] EMBL CD117626             [ACTGTCTTTACACCGAATGCCATGCCAATCCATACCTTACGTGGTCGTCAACATTCTGATGTACAGAAAAAGTCATCAGATAATACTAAGAATTGTACAGATATAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATCCATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTTTGTCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTCTTGGACAATATCTTCATTCTGCTGAAGCTGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGATCA]




>consensus_7941#1
ACTGTCTTTACACCGAATGCCATGCCAATCCATACCTTACGTGGTCGTCAACATTCTGAT
GTACAGAAAAAGTCATCAGATAATACTAAGAATTGTACAGATATAAAAAATTTGACAACT
AGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATCCATCGATTATCAACAAA
GATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTTTGTCTGAACAGCAACAA
TTTATTGGGAATTATTCCACATCAAATAACATTCTTGGACAATATCTTCATTCTGCTGAA
GCTGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCA
GCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTA
TGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGA
AGTCACGAAATCGTGATCA

consensusID : consensus_7941#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGTCCAAGAATTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTGCCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATCCGGAGTTAAAGGAAATTTTGTCCTGTC]

[+] EMBL CD069688             [TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGTCCAAGAATTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTGCCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATCCGGAGTTAAAGGAAATTTTGTCCTGTC]




>consensus_7941#2
TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCA
TGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGA
TAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACT
TGTTACTGTTGGTCCAAGAATTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCTT
AATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTGCCTTTAATCGAGGGTTA
AACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATCCGGAGTTAAAGGAAATTTTGT
CCTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7941#0      TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGC 60
consensus_7941#2      ------------TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGC 48
consensus_7941#1      ----ACTGTCTTTACACCGAATGCCAT--GCCAATCCATAC-CTTACGTGGTCGT-CAAC 52
                                  *    * ***** **    * *   ***   ***  ** *  * ** *

consensus_7941#0      ATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATG 120
consensus_7941#2      ATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATG 108
consensus_7941#1      ATTCTGA-----TGTACAGAAAAAG---TCATCAGATA-ATACTAAGAATTGTACAGATA 103
                      ** ** *     **** * **  **    ** *** *  **     **   *     ** 

consensus_7941#0      TGAAAAATTAGATAGGTA-TAGAAATAAAATACTA-CCACTTATGTACCCAGAGTATAGA 178
consensus_7941#2      TGAAAAATTAGATAGGTA-TAGAAATAAAATACTA-CCACTTATGTACCCAGAGTATAGA 166
consensus_7941#1      TAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATC 163
                      * ******* ** *  ** *  * *     *** *    ** ** **   * *    *  

consensus_7941#0      AGGTTAGTATCACTT--GTTACTGTTGGTCCAAGAATTTTATCCTCTCACCTTCAGTCAC 236
consensus_7941#2      AGGTTAGTATCACTT--GTTACTGTTGGTCCAAGAATTT-ATCCTCTCACCTTCAGTCAC 223
consensus_7941#1      CATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTT 223
                           * *****     * ** *    **     * **  *     * ** **   **  

consensus_7941#0      GAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTG 296
consensus_7941#2      GAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTG 283
consensus_7941#1      TG---TCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTC---TTG 277
                             *** ****            *     * **   *  ***    *       **

consensus_7941#0      AAATAAATCGAAACACTA--CTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTT 354
consensus_7941#2      CCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATC-CGG 342
consensus_7941#1      GACAATATCTTCATTCTG--CTGAAGCTGAGT---CTAAAGATGTTTCA-AATGCAATTA 331
                            ***           * **     *     ** *       * * *         

consensus_7941#0      AGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTC 414
consensus_7941#2      AGTTAAAGGAAATTTTGTCCTGTC------------------------------------ 366
consensus_7941#1      ATCGACTGATAAATTTAACT-----GATTATTCAGCATCCTTAATTCATGTATATAATCA 386
                      *   *  *  ** ***  *                                         

consensus_7941#0      TGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACT 474
consensus_7941#2      ------------------------------------------------------------
consensus_7941#1      GGCTCCAGCAGCTGCAT------TTCTTGACCCGGTTGTA----TGTGAAAAATTAGATA 436
                                                                                  

consensus_7941#0      TGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGA 534
consensus_7941#2      ------------------------------------------------------------
consensus_7941#1      GGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGA 496
                                                                                  

consensus_7941#0      TAATCAGTCAA 545
consensus_7941#2      -----------
consensus_7941#1      TCA-------- 499