These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 545 fasta sequence [TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT-GGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACTTGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGATAATCAGTCAA] [+] EMBL CD069737 [TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAA TTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCt ] [-] EMBL CD069702 [ gGTTTCAAAGGCAATTAATCGACTGATAAATGTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCC ] [+] EMBL CD181247 [ TANTCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAATTTTATCCTCTCACCTTCAGTCAC ] [-] EMBL CD161276 [ ATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTT GGTCCAAGAATTTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTGAAATAAATCGAAACACTACTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTTAGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTCTGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACTTGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGATAATCAGTCAA] consensusID : consensus_7941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [ACTGTCTTTACACCGAATGCCATGCCAATCCATACCTTACGTGGTCGTCAACATTCTGATGTACAGAAAAAGTCATCAGATAATACTAAGAATTGTACAGATATAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATCCATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTTTGTCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTCTTGGACAATATCTTCATTCTGCTGAAGCTGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGATCA] [+] EMBL CD117626 [ACTGTCTTTACACCGAATGCCATGCCAATCCATACCTTACGTGGTCGTCAACATTCTGATGTACAGAAAAAGTCATCAGATAATACTAAGAATTGTACAGATATAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATCCATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTTTGTCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTCTTGGACAATATCTTCATTCTGCTGAAGCTGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGATCA] consensusID : consensus_7941#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGTCCAAGAATTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTGCCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATCCGGAGTTAAAGGAAATTTTGTCCTGTC] [+] EMBL CD069688 [TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGCATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATGTGAAAAATTAGATAGGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGGTTAGTATCACTTGTTACTGTTGGTCCAAGAATTTATCCTCTCACCTTCAGTCACGAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTGCCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATCCGGAGTTAAAGGAAATTTTGTCCTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7941#0 TGAGTCTAAAGATGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGC 60 consensus_7941#2 ------------TGTTTCAAATGCAATTAATCGACTGATAAATTTAACTGATTATTCAGC 48 consensus_7941#1 ----ACTGTCTTTACACCGAATGCCAT--GCCAATCCATAC-CTTACGTGGTCGT-CAAC 52 * * ***** ** * * *** *** ** * * ** * consensus_7941#0 ATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATG 120 consensus_7941#2 ATCCTTAATTCATGTATATAATCAGGCTCCAGCAGCTGCATTTCTTGACCCGGTTGTATG 108 consensus_7941#1 ATTCTGA-----TGTACAGAAAAAG---TCATCAGATA-ATACTAAGAATTGTACAGATA 103 ** ** * **** * ** ** ** *** * ** ** * ** consensus_7941#0 TGAAAAATTAGATAGGTA-TAGAAATAAAATACTA-CCACTTATGTACCCAGAGTATAGA 178 consensus_7941#2 TGAAAAATTAGATAGGTA-TAGAAATAAAATACTA-CCACTTATGTACCCAGAGTATAGA 166 consensus_7941#1 TAAAAAATTTGACAACTAGTGTACAAGGTTTACAAATTTCTAATTTAAATAAAACTAATC 163 * ******* ** * ** * * * *** * ** ** ** * * * consensus_7941#0 AGGTTAGTATCACTT--GTTACTGTTGGTCCAAGAATTTTATCCTCTCACCTTCAGTCAC 236 consensus_7941#2 AGGTTAGTATCACTT--GTTACTGTTGGTCCAAGAATTT-ATCCTCTCACCTTCAGTCAC 223 consensus_7941#1 CATCGATTATCAACAAAGATAATAAAAGTTTGGAAGTTGAAGATGTTGACATTTCATCTT 223 * ***** * ** * ** * ** * * ** ** ** consensus_7941#0 GAAATCGTGATCAGCCTACAACTGCACGTCAAAACTCTGCACAAAATGATACTCGTACTG 296 consensus_7941#2 GAAATCGTGATCAGCTTAATCTCGTCCGTGGCGAATCCGTATAAAACGGTAGGAGTAGTG 283 consensus_7941#1 TG---TCTGAACAGCAACAATTTATTGGGAATTATTCCACATCAAATAACATTC---TTG 277 *** **** * * ** * *** * ** consensus_7941#0 AAATAAATCGAAACACTA--CTGACGTAAAACTAACTAAAAACAGTTCAGAAAATCGTTT 354 consensus_7941#2 CCTTTAATCGAGGGTTAAACCGGAGCTTGAGCGTACTCATGGACGATAAGAGAATC-CGG 342 consensus_7941#1 GACAATATCTTCATTCTG--CTGAAGCTGAGT---CTAAAGATGTTTCA-AATGCAATTA 331 *** * ** * ** * * * * consensus_7941#0 AGTTACTGACAATTTTGTCGCGCAAGATTATTCAGGTTTTCTTGATACTCAGGAAAATTC 414 consensus_7941#2 AGTTAAAGGAAATTTTGTCCTGTC------------------------------------ 366 consensus_7941#1 ATCGACTGATAAATTTAACT-----GATTATTCAGCATCCTTAATTCATGTATATAATCA 386 * * * ** *** * consensus_7941#0 TGTCCTACCTACTCCATCAGGACTTTCCGAACCGTCATCAGCTTCATCAGACAAAGGACT 474 consensus_7941#2 ------------------------------------------------------------ consensus_7941#1 GGCTCCAGCAGCTGCAT------TTCTTGACCCGGTTGTA----TGTGAAAAATTAGATA 436 consensus_7941#0 TGCATCATCACAAAAGCCTTCAAATATCAGCGCAGAAACATTGATTTCAGTGCAACTTGA 534 consensus_7941#2 ------------------------------------------------------------ consensus_7941#1 GGTATAGAAATAAAATACTACCACTTATGTACCCAGAGTATAGAAGTCACGAAATCGTGA 496 consensus_7941#0 TAATCAGTCAA 545 consensus_7941#2 ----------- consensus_7941#1 TCA-------- 499 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||