cluster # 7948

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7948 cluster # 7948 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7948#0 length = 996 sequences # 4

consensus_7948#1 length = 296 sequences # 1
consensus_7948#2 length = 279 sequences # 1

consensusID : consensus_7948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 996
fasta sequence

                              [AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTTCACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATGTGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTATTGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTCTTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTTAACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACTACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAGCTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGAAACTTGCAAGTAAGAATAAAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACAGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAAATATTCCGAAGTAGGGTTT]

[+] EMBL CD159383             [AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTTCACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATGTGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTATTGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTCTTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL SMAA14064            [                                                                                                       TTTCCTGGGGTTTACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD179194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tccTTTTTTTCTCTCTTCCAACTGTAATGCAATAAACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTTAACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACTACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAGCTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGAAACTTGCAAGTAAGAATAAAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTC                                                                                                                                                     ]
[+] EMBL CD166424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACAGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAAATATTCCGAAGTAGGGTTT]




>consensus_7948#0
AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTT
CACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTG
TCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTA
GAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAG
ACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAA
AAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATG
TGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTAT
TGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTC
TTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTT
AACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACT
ACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAG
CTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGA
AACTTGCAAGTAAGAATAAAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAA
ATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTA
ATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATTGTGAA
AGGTACATGTTAACGTCCAAACAACAGCGGTACAGAATCACCAAAATATATGTGACCCAT
GTTCCTTGACTATTCAAATATTCCGAAGTAGGGTTT

consensusID : consensus_7948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [AAACATTTGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAAAATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAAATATCCCGAAGTAGGGTTT]

[+] EMBL CD166380             [AAACATTTGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAAAATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAAATATCCCGAAGTAGGGTTT]




>consensus_7948#1
AAACATTTGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAA
ACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGC
CTTTCTCCCAGTGTAACAATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCC
AAACAACAGCGGTACTGAGGAGTGGAACACATAGTAAAATGAAGTGCACTACCAGAATCA
CCAAAATATATGTGACCCATGTTCCCTGACTATTCAAATATCCCGAAGTAGGGTTT

consensusID : consensus_7948#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CTACTATCTGAGATGCAAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGAACATGGGTCACATATATTTTGGCTGATTCTGGATAGATGCACGTTCAATTCACTAAGATGTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCCTTTCACAAATAATCCGTATGTATCTGATCTGTCACACATGCGAGTACAGGCAGTCCGTATTTAAACATTTAGAATCTAAGGTGAAACTC]

[+] EMBL AI390063             [CTACTATCTGAGATGCAAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGAACATGGGTCACATATATTTTGGCTGATTCTGGATAGATGCACGTTCAATTCACTAAGATGTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCCTTTCACAAATAATCCGTATGTATCTGATCTGTCACACATGCGAGTACAGGCAGTCCGTATTTAAACATTTAGAATCTAAGGTGAAACTC]




>consensus_7948#2
CTACTATCTGAGATGCAAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATA
ATTGAATAGTCAAGGAACATGGGTCACATATATTTTGGCTGATTCTGGATAGATGCACGT
TCAATTCACTAAGATGTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTA
ACATGTACCCTTTCACAAATAATCCGTATGTATCTGATCTGTCACACATGCGAGTACAGG
CAGTCCGTATTTAAACATTTAGAATCTAAGGTGAAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7948#0      AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTT 60
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      CACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTG 120
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTA 180
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      GAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAG 240
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      ACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAA 300
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      AAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATG 360
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTAT 420
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTC 480
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTT 540
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      AACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACT 600
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      ACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAG 660
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      ------------------------------------------------------------
                                                                                  

consensus_7948#0      CTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGA 720
consensus_7948#1      ------------------------------------------------------------
consensus_7948#2      --------------------------------------------CTACTATCTGAGATGC 16
                                                                                  

consensus_7948#0      AACTTGCAAGTAAGAATAAAACAATCGGGAC--AACTAAGAGGAATTTCTTCGTCGGTGA 778
consensus_7948#1      ------------------AAACATTTGGGAC--AACTAAGAGGAATTTCTTCGTCGGTGA 40
consensus_7948#2      AAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGA 76
                                        *           *  *  *  **  ****   * ***   **

consensus_7948#0      AAATTGTTCAC-CATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGAT 837
consensus_7948#1      AAATTGTTCAC-CATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGAT 99
consensus_7948#2      ACATGGGTCACATATATTTTGGCTGATTCTGGATAG-ATGCACGTTCAATTCACTAAGAT 135
                      * ** * ****  **  *    *** * *     **   * **     **** *   ***

consensus_7948#0      CTAATG-TTTCAT-ACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATT 895
consensus_7948#1      CTAATG-TTTCAT-ACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATT 157
consensus_7948#2      GTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCC-TTTC 194
                       *      * *** * * *    * *  **    *** **  *  * *  ** *  * * 

consensus_7948#0      GTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTAC---------------------- 933
consensus_7948#1      GTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAA 217
consensus_7948#2      ACAAATAATCCGTAT--GTATCTGATCTGTCACA-------------------------- 226
                         **   * * * *     **  * *     *                           

consensus_7948#0      ----------------AGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAA 977
consensus_7948#1      AATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAA 277
consensus_7948#2      ---------------------CATGCGAGTACAGGCAGTCCGTATT---TAAACATTTAG 262
                                           **    * ** * *    ** * **   * *  *** * 

consensus_7948#0      ATATTCCGAAGTAGGGTTT 996
consensus_7948#1      ATATCCCGAAGTAGGGTTT 296
consensus_7948#2      A--ATCTAAGGTGAAACTC 279
                      *    *  * **     *