cluster # 7949

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Schistosoma mansoni
cluster # 7949 cluster # 7949 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7949#0 length = 1138 sequences # 4

consensus_7949#1 length = 557 sequences # 1
consensus_7949#2 length = 361 sequences # 1

consensusID : consensus_7949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1138
fasta sequence

                              [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTAAGTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTGTGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCTGTCACTAC]

[+] EMBL CD074447             [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD074265             [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD135232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTAAG                                                                                                                                                                         ]
[-] EMBL CD132100             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTGTGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCTGTCACTAC]




>consensus_7949#0
AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTA
ACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTT
TTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGA
AGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAG
CACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTT
ATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTT
ATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGC
ATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGG
TAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGG
CAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCA
ACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATA
CAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTT
TCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATACTTAAAT
GGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTA
TTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTG
CGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGAT
TGTGTTAAGTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGT
TCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTGTGTTTCCTGC
GAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCTGTCACTAC

consensusID : consensus_7949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [GTAGGTTNNATACTTTAATATACCCATTCNTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA]

[-] EMBL CD080348             [GTAGGTTNNATACTTTAATATACCCATTCNTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA]




>consensus_7949#1
GTAGGTTNNATACTTTAATATACCCATTCNTTATTCAACCATTTAGAAGCGTACCAAAAA
GCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTA
TAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCA
AAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTT
TTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACC
CGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCT
ATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACG
CTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCA
TTCATATCATCAGCATGTGATCCATACTTAAATGGATTTNCCTGGAGGAGACCTCCTCGT
GCCGAATNTTGGCCCGA

consensusID : consensus_7949#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [ATACTATGACTAGGGCTGTTTTCTGATATTACTNTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGCCTCGTGCCGAATCTTGGCCG]

[-] EMBL CD077571             [ATACTATGACTAGGGCTGTTTTCTGATATTACTNTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGCCTCGTGCCGAATCTTGGCCG]




>consensus_7949#2
ATACTATGACTAGGGCTGTTTTCTGATATTACTNTGTGTCGAAATGCATTCATATCATCA
GCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCC
ATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGA
CTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGAT
GAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTA
TACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGCCTCGTGCCGAATCTTGGCC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7949#0      AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTA 60
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      ACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTT 120
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      TTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGA 180
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      AGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAG 240
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      CACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACA---TT 297
consensus_7949#1      -----------------------------GTAGGTTN--NATACTTTAATATACCCATTC 29
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      CTTATTCAAC-ATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAA 356
consensus_7949#1      NTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAA 89
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      AGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATT 416
consensus_7949#1      AGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATT 149
consensus_7949#2      -------------------------------------------------ATACTATGACT 11
                                                                       * *  ** * *

consensus_7949#0      ATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAG 476
consensus_7949#1      ATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAG 209
consensus_7949#2      A-GGGCTGTTTTCTGATATTACTNTGTGTCGAAAT-GCATTCATATCATCAGCATGTGAT 69
                      * *   * *  **    * *    * *  * **** *   ** * * *   *  * * * 

consensus_7949#0      --GGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAA 534
consensus_7949#1      --GGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAA 267
consensus_7949#2      CCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGA 129
                            * ***  **  *     *   ** *** *  **  ** **  **   *     *

consensus_7949#0      TAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAAC 594
consensus_7949#1      TAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAAC 327
consensus_7949#2      C--GTACGGTGTTATT-ACTTCGACATCCTCGCCTAGTGTT-----GTTGTGACTAAGAC 181
                         *  *  *   *** **    *  *     ** *   *       *    * * * **

consensus_7949#0      CATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGG 654
consensus_7949#1      CATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGG 387
consensus_7949#2      TCTGGGATGTTAAAGAACT-----------GCGATTAGATC--CATAT----TCTGGTGA 224
                        *   *  * * ******           ** ** * ***  ** **      *  ** 

consensus_7949#0      CATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGG 714
consensus_7949#1      CATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGG 447
consensus_7949#2      TGCAGATGGGAAAGATG---AACTGGGTCGGTG------------ATACGATTGTGTTGA 269
                         * *  * * *** *   * * ***  *  *            **** **      * 

consensus_7949#0      CTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATAC 774
consensus_7949#1      CTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATAC 507
consensus_7949#2      CTGTACATTGTTACTAGCTCTT--CGGAGCCTATACATCTTTTGACGACTTGGTTCACCA 327
                      ****    ** ** **  *  *  ** *    ** ***    * *  *  ** * **   

consensus_7949#0      TTAAATGGATTTCC-TGGAGGAGACCTT---GTGTTTACTGGAGGATCCATTTTGTGACG 830
consensus_7949#1      TTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA---------- 557
consensus_7949#2      CTTTGAGCGTTTGC-----------CTC---GTGCCGAATCTTGGCCG------------ 361
                       *    *  *** *           **    ***   * *   **               

consensus_7949#0      TACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGT 890
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      TAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCG 950
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      GTGATACGATTGTGTTAAGTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTG 1010
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      ACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTG 1070
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      TGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCT 1130
consensus_7949#1      ------------------------------------------------------------
consensus_7949#2      ------------------------------------------------------------
                                                                                  

consensus_7949#0      GTCACTAC 1138
consensus_7949#1      --------
consensus_7949#2      --------