These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCACTCTTTGAAAAATGACACACTCACTCACACTCGTTTTCTTAGTAGCCATTGGTTACGCCCCCGCCCACACCACATCACATGTCTATTTGGGTGGGTACGGTGGCGGTTGCTATGGTTGCGATTGTGATATCGGTTATGGCGATTGTGGATATGGTGGAGGCTGTACT] [+] EMBL BF936271 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCACTCTTTGAAAAATGACACACTCACTCACACTCGTTTTCTTAGTAGCCATTGGTTACGCCCCCGCCCACACCACATCACATGTCTATTTGGGTGGGTACGGTGGCGGTTGCTATGGTTGCGATTGTGATATCGGTTATGGCGATTGTGGATATGGTGGAGGCTGTACT] consensusID : consensus_795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [ACACCAACAATTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGCAGTGACTGTGGCGGCAGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGAGCTNCAAAGTNTTTGTT] [-] EMBL CD128898 [ACACCAACAATTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGCAGTGACTGTGGCGGCAGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGAGCTNCAAAGTNTTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_795#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60 consensus_795#1 ------------------------------------------------------------ consensus_795#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120 consensus_795#1 ------------------------------------------------------------ consensus_795#0 GAGACCCACTCTTTGAAAAATGACACACTCACTCACACTCGTTTTCTTAGTAGCCATTGG 180 consensus_795#1 -ACACCAACAATTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGG 59 * *** ** ************ *** ************** ***************** consensus_795#0 TTACGCCCCCGCCCACACCACATCACATGTCTATTTGGGTGGGTACGGTGGCGGTTGCTA 240 consensus_795#1 TTACGCCACCGCCTACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTA 119 ******* ***** *************** ***** ************************ consensus_795#0 TGGTTGCGATTGTGATATCGGTTATGGCGATTGTGGATATGGTGGAGGCTGTACT----- 295 consensus_795#1 TGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGCAG 179 **** ************ ************* *********************** consensus_795#0 ------------------------------------------------------------ consensus_795#1 TGACTGTGGCGGCAGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGG 239 consensus_795#0 ----------------------------- consensus_795#1 TAATTACGGTGAGCTNCAAAGTNTTTGTT 268 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||