cluster # 7953

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Schistosoma mansoni
cluster # 7953 cluster # 7953 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7953#0 length = 775 sequences # 5

consensus_7953#1 length = 484 sequences # 1

consensusID : consensus_7953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 775
fasta sequence

                              [TTGTGTTTTCTGGCCATTCAGGCCCTTTACCATAATGTGCACGTTTTACACCGGCACCAGCATGACCGACTATCATTGGTTGGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAGGGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAAACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGGAAGACAAAGTAGACCCTGGTCATCTTGGTAATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGGAACCAGAAACAGTTTCTAATTCTAAATCAACAGACAATATAGAATTCATTGACGAATTACGGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTATAAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTATTTTATTGAAAGCATCAACTTTCTCAGTATCCATTTTCAAAGATCTAACCCGCATTTTCTGGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAGTCTTTTGTGTCCATTACACCTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCGTGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCACAATTCAAGGTTATATATAA]

[-] EMBL CD119333             [TTGTGTTTTCTGGCCATTCAGGCCCTTTACCATAATGTGCACGTTTTACACCGGCACCAGCATGACCGACTATCATTGGTTGGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAGGGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAAACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD118721             [                                                                               TTGGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAGGGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAAACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGAAAGACAAAGTAGACCCTGGTCATCTTGGTAATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGGAACCAGAAACAGTTTCTAATTCTAAATCAACAGACAATATAGAATTCATTGACGAATTACGGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTATAAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTATTTTATTGAAAGCATCAACTTTCTCAGTATCCATTTTCAAAGATCTAACCCGCATTTTCTGGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACA                                                                                                                                                     ]
[+] EMBL CD119562             [                                                                                 GGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAGGGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAAACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGGAAGACAAAGTAGACCCTGGTCATCTTGGTAATCTGGACGTAAAGTAAATGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD157348             [                                                                                  GGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAGGGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAAACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD133697             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGATCTAACCCGCATTCTCTGGAACACAGAATCTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAGTCTTTTGTGTCCATTACACCTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCGTGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCACAATTCAAGGTTATATATAA]




>consensus_7953#0
TTGTGTTTTCTGGCCATTCAGGCCCTTTACCATAATGTGCACGTTTTACACCGGCACCAG
CATGACCGACTATCATTGGTTGGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAG
GGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAA
ACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGGAAGACAAA
GTAGACCCTGGTCATCTTGGTAATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGG
AACCAGAAACAGTTTCTAATTCTAAATCAACAGACAATATAGAATTCATTGACGAATTAC
GGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTAT
AAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTA
TTTTATTGAAAGCATCAACTTTCTCAGTATCCATTTTCAAAGATCTAACCCGCATTTTCT
GGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAG
TTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAG
TCTTTTGTGTCCATTACACCTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCG
TGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCACAATTCAAGGTTATATATAA

consensusID : consensus_7953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [AATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGGAACCAGAAACAGTTTCTAATTCAATATAGAATTCATTGACGAATTACGGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTATAAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTATTTTATTGAAAGCATCAACTTTCTCAGTATCTATTTTCAAAGATCTAACCCGCATTTTCTGGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAGTCTTTTGTGTCCATTACACTTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCGTGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCGCAA]

[-] EMBL CD133371             [AATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGGAACCAGAAACAGTTTCTAATTCAATATAGAATTCATTGACGAATTACGGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTATAAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTATTTTATTGAAAGCATCAACTTTCTCAGTATCTATTTTCAAAGATCTAACCCGCATTTTCTGGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAGTCTTTTGTGTCCATTACACTTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCGTGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCGCAA]




>consensus_7953#1
AATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGGAACCAGAAACAGTTTCTAATT
CAATATAGAATTCATTGACGAATTACGGTTTGAAACAAGAAAACCACTGGCTGCATGTGG
AGTTACAGGAATCCATCTTTCCGTATAAAAAGAACCTTCAACAGACCATGATAAAGATGG
ATCTACACTACAAGAAAATAACATTATTTTATTGAAAGCATCAACTTTCTCAGTATCTAT
TTTCAAAGATCTAACCCGCATTTTCTGGAACACAGAATTTTTTGAATTGACCGAGTAAAT
GACCACGGCTACATAGGATTTCATAGTTGTCATATAGCAGTAGGAGTGAACAAAGTAATC
AGGATGTTTCGTTTCTAGTAAGGAAGTCTTTTGTGTCCATTACACTTTTTTAGAGGGAGT
GAAACTGGCTCATGCAAGATGATGCGTGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGC
GCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7953#0      TTGTGTTTTCTGGCCATTCAGGCCCTTTACCATAATGTGCACGTTTTACACCGGCACCAG 60
consensus_7953#1      ------------------------------------------------------------
                                                                                  

consensus_7953#0      CATGACCGACTATCATTGGTTGGGAGGTTGCATTTTGATGCATAGATGAATTAACTGGAG 120
consensus_7953#1      ------------------------------------------------------------
                                                                                  

consensus_7953#0      GGAGGCATAAATAGAGAGGTGTTCTTTGATCCGTATGAAGTGGTTTGTAGTCAAATATAA 180
consensus_7953#1      ------------------------------------------------------------
                                                                                  

consensus_7953#0      ACAGATAGTACAGGTAAATTTCATCCAAAATACCGCTATCGGAAGAAACTGGAAGACAAA 240
consensus_7953#1      ------------------------------------------------------------
                                                                                  

consensus_7953#0      GTAGACCCTGGTCATCTTGGTAATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGG 300
consensus_7953#1      ---------------------AATCTGGACGTAAAGTAAATGAAACACAAGATTTTTCGG 39
                                           ***************************************

consensus_7953#0      AACCAGAAACAGTTTCTAATTCTAAATCAACAGACAATATAGAATTCATTGACGAATTAC 360
consensus_7953#1      AACCAGAAACAGTTTCTAATTC-------------AATATAGAATTCATTGACGAATTAC 86
                      **********************             *************************

consensus_7953#0      GGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTAT 420
consensus_7953#1      GGTTTGAAACAAGAAAACCACTGGCTGCATGTGGAGTTACAGGAATCCATCTTTCCGTAT 146
                      ************************************************************

consensus_7953#0      AAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTA 480
consensus_7953#1      AAAAAGAACCTTCAACAGACCATGATAAAGATGGATCTACACTACAAGAAAATAACATTA 206
                      ************************************************************

consensus_7953#0      TTTTATTGAAAGCATCAACTTTCTCAGTATCCATTTTCAAAGATCTAACCCGCATTTTCT 540
consensus_7953#1      TTTTATTGAAAGCATCAACTTTCTCAGTATCTATTTTCAAAGATCTAACCCGCATTTTCT 266
                      ******************************* ****************************

consensus_7953#0      GGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAG 600
consensus_7953#1      GGAACACAGAATTTTTTGAATTGACCGAGTAAATGACCACGGCTACATAGGATTTCATAG 326
                      ************************************************************

consensus_7953#0      TTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAG 660
consensus_7953#1      TTGTCATATAGCAGTAGGAGTGAACAAAGTAATCAGGATGTTTCGTTTCTAGTAAGGAAG 386
                      ************************************************************

consensus_7953#0      TCTTTTGTGTCCATTACACCTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCG 720
consensus_7953#1      TCTTTTGTGTCCATTACACTTTTTTAGAGGGAGTGAAACTGGCTCATGCAAGATGATGCG 446
                      ******************* ****************************************

consensus_7953#0      TGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCACAATTCAAGGTTATATATAA 775
consensus_7953#1      TGTTCCACAGGCAGGCAGTAGCACGGAAGAGCGCGCAA----------------- 484
                      ********************************** ***