These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence [AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCATGAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGCTATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGACAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAACTATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGTGAAACATTCTTCCTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCAGTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCTCTAAGACTTTCGCTGTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGTTAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTCATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGCTTCTTGCTTGCTTACTTGATCAT] [+] EMBL CD118699 [AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCATGAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGCTATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGACAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAACTATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGTGAAACATTCTTCCTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATG ] [+] EMBL CD200739 [ CGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTAGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCAGTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCTCTAAGACTTTCGCTGTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGTTAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTCATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGCTTCTTGCTTGCTTACTTGATCAT] consensusID : consensus_7956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 553 fasta sequence [AGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTNCACAGCATCGACTCGTTTTGTTCAAATCTACTCGAAGCATCC] [+] EMBL CD161167 [AGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTNCACAGCATCGACTCGTTTTGTTCAAATCTACTCGAAGCATCC] [-] EMBL CD065101 [ aTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCAGTTTCAGACGCCTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGA ] [+] EMBL CD125943 [ gacTATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCG TTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGCTTcc ] [-] EMBL CD125903 [ TATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTAATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGATTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCC TATCGGCACTGGGGGAGACAGTCGCTGATGGTGTC ATACAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7956#0 AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCAT 60 consensus_7956#1 ------------------------------------------------------------ consensus_7956#0 GAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGC 120 consensus_7956#1 ------AGCAATCGACTCGTTTTGTTCAGATCTACT-CGAAGCATCCTTCTTCGAATCCT 53 **** * ** * ** * * * ** * * * consensus_7956#0 TATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGA 180 consensus_7956#1 TATCGGCACTGGGGGAGACAGTCGCT--GATGGTGTCGATACAGAAGTTTCAAC--ATGC 109 *** ** * * ** * * * ** * * * * ** ** * * *** consensus_7956#0 CAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAAC 240 consensus_7956#1 TCGGTT--TCAGACGCCTGCATTTCAACA---TGATATGACTGAATAG-------ATGAG 157 * ** * * * **** * ** * ** * *** * *** ** * consensus_7956#0 TATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGT-GAAACATTCTTC 299 consensus_7956#1 GGTTGTTGATTCACAG--CAATCGACTCGTTT-TGTTCAGATCTACTCGAAGCATCCTTC 214 * *** * * ** * * *** * * * * * ** * *** *** **** consensus_7956#0 CTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCA 359 consensus_7956#1 TTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCA 274 * ** **** *** * ***** ************************************* consensus_7956#0 ACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGT 419 consensus_7956#1 ACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGT 334 ******************** **************** ********************** consensus_7956#0 TGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCC 479 consensus_7956#1 TGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCC 394 ********************************************************* ** consensus_7956#0 TTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCA 539 consensus_7956#1 TTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCG 454 ******************************************* ***** ********* consensus_7956#0 GTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCT 599 consensus_7956#1 GTTTCAGACGCCTGCATTTCA---ACATGATGTGAC-TGAATAGATGAGGGTTGTTGATT 510 ********* *********** ** * **** * ** * * * **** * consensus_7956#0 CTAAGACTTTCGCT-GTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGT 658 consensus_7956#1 NCACAGCATCGACTCGTTTTGTTCAAATCTA---CTCGAAGCATCC-------------- 553 * * * ** ** * *** *** * * * *** consensus_7956#0 TAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTC 718 consensus_7956#1 ------------------------------------------------------------ consensus_7956#0 ATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGC 778 consensus_7956#1 ------------------------------------------------------------ consensus_7956#0 TTCTTGCTTGCTTACTTGATCAT 801 consensus_7956#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||