cluster # 7965

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Schistosoma mansoni
cluster # 7965 cluster # 7965 Sequences # 6 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7965#0 length = 625 sequences # 1
consensus_7965#1 length = 520 sequences # 1

consensus_7965#2 length = 376 sequences # 2
consensus_7965#3 length = 354 sequences # 1
consensus_7965#4 length = 186 sequences # 1

consensusID : consensus_7965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTGGAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAATGAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCAGGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGATCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCACGTTTCTGCCATTGAGCTATTAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAATATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATTGACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACTGATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGATAGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA]

[+] EMBL CD190946             [CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTGGAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAATGAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCAGGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGATCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCACGTTTCTGCCATTGAGCTATTAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAATATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATTGACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACTGATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGATAGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA]




>consensus_7965#0
CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTG
GCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTGGAAAGAATAGAA
GTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAATGAATTGGCAGTG
TTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCAGGAGTAGCAGTA
CCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGATCACTAGCGGAA
CTTGCTGTTGTTGCCAAAGCTAGAGCACGTTTCTGCCATTGAGCTATTAGCTGCTTTTGT
TGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAATATTGAATCCGGAT
AGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATTGACTGGCTGAATT
GTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACTGATTGNTATGCAG
CTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGATAGCTGATTGACTT
CTGGTTTAACGTTACCAGAGAGTGA

consensusID : consensus_7965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [GGACTAACACAGGCCACCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTAGACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGTTCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAAGCCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGATCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAACTCTCCACAGTATCTGATATATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTCACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTAGTTTGTATTGGTTGTGCTTACAACACCAAAATTAAAAAATATTCGTTATTCTAGTTGGTAATAACAGATAGTT]

[+] EMBL CD097334             [GGACTAACACAGGCCACCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTAGACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGTTCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAAGCCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGATCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAACTCTCCACAGTATCTGATATATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTCACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTAGTTTGTATTGGTTGTGCTTACAACACCAAAATTAAAAAATATTCGTTATTCTAGTTGGTAATAACAGATAGTT]




>consensus_7965#1
GGACTAACACAGGCCACCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAAAACTGAAACT
GAAACTGCCAGTCAATGTTCCGTGTAAAATTAGACGGTGAGTATTATGTCATAAAATCAC
ACAAGATGCTTCACAATCATCCTTATAGTAGTTCATGGATGGTTTGTTATCCACGAACCA
GAAGATTGCCCTCAAAAGAAAAAAAAGCTAAAGCCTTTGATACCACAATCAGCATCAGCA
GATGAATTAATAGAAAGTATTAAAGATCGATCTGGTATGCAGGTTACTGCTGCTGATGTG
AAGACTATGAAAGCTCAACTCTCCACAGTATCTGATATATTGCGGGAAAACGGTGAACTA
AGAGAGTATTCAGAAAATGGAAATGTCACCAGAATCTGCCTTAGTACTTATGAGCGGATA
GAATTATATAACAAATATTCAGAAGTAGTTTGTATTGGTTGTGCTTACAACACCAAAATT
AAAAAATATTCGTTATTCTAGTTGGTAATAACAGATAGTT

consensusID : consensus_7965#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence

                              [CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG-ACAAT--GA-GGCCGACTGGGCTTCCGTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT]

[-] EMBL CD065451             [CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG ACAAT  GA GGCCGACTGG                                                                                                                                                                  ]
[+] EMBL CD067734             [                                           CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT]




>consensus_7965#2
CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC
GTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCGAACA
CAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTT
GCCCCAATGTCTCACCGACAATGAGGCCGACTGGGCTTCCGTCTCACCTTCAAATACGCC
TTCCCCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCG
TTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCATCTCACCGACACGCTCAACCAATCG
TTCCCGTTCCGGTTGT

consensusID : consensus_7965#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCA]

[+] EMBL CD126397             [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCA]




>consensus_7965#3
ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCG
ACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTCTGCG
TCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTC
TCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGC
TCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAAT
TCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCA

consensusID : consensus_7965#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [GGCCCAATGTCTCACCGAACACTGCGACTGCCGAGCGTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCAACTTCACGACCATTCAAATACGCCTTC]

[+] EMBL CD166538             [GGCCCAATGTCTCACCGAACACTGCGACTGCCGAGCGTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCAACTTCACGACCATTCAAATACGCCTTC]




>consensus_7965#4
GGCCCAATGTCTCACCGAACACTGCGACTGCCGAGCGTCGGCTTCCGTCTCACCTTCAAA
TACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCG
TTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCAACTTCACGACCATTCAAATAC
GCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7965#2      CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC 60
consensus_7965#3      -----------------------------------------------ACCAATCGTTCCC 13
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      ------------CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC 48
consensus_7965#1      ----------------------------GGACTAACACAGGCCACCAAGCCTCCTGTCCT 32
                                                                                  

consensus_7965#2      GTTCCGGTTGTG-CTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCG--A 117
consensus_7965#3      GTTCCGGTTGTG-CTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCG--A 70
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      GTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTG 108
consensus_7965#1      TTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTA 92
                                                                                  

consensus_7965#2      ACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTC-TGCGTCCGCTT-C 175
consensus_7965#3      ACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTC-TGCGTCCGCTT-C 128
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      GAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAAT 168
consensus_7965#1      GACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGT 152
                                                                                  

consensus_7965#2      AACTTGCC----CCAATGTCTCA--CCGA-C-AATGAG---GCCGAC--TGGGCTTCC-- 220
consensus_7965#3      AACTTGCC----CCAATGTCTCA--CCGAAC-ACTTCGACTGCCGAC--TCGGCTTCC-- 177
consensus_7965#4      -----GGC----CCAATGTCTCA--CCGAAC-ACTGCGACTGCCGAGCGTCGGCTTCC-- 46
consensus_7965#0      GAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCA 228
consensus_7965#1      TCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAA 212
                           *                   *      * *                         

consensus_7965#2      ---GTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCG 277
consensus_7965#3      ---GTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCG 234
consensus_7965#4      ---GTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCG 103
consensus_7965#0      GGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGA 288
consensus_7965#1      G--CCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGA 270
                                   *           *   *  *                           

consensus_7965#2      ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCA 335
consensus_7965#3      ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAG 292
consensus_7965#4      ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCC-CAA 160
consensus_7965#0      TCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCAC-GTTTCTGCCATTGAGCTAT 347
consensus_7965#1      TCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAAC--TCTCCACAG 328
                       *        *       * *   *                   **  *           

consensus_7965#2      TCTC-------ACCGACACG------CTCAACCAATCGTTCCCGTTCCGGTTGT------ 376
consensus_7965#3      ACTCCAATTCGACTGGAGCGA----ACACAGACACACGTTCCGATTCAACCTGTTCTACC 348
consensus_7965#4      CTTC-------ACGACCAT--------TCAAATACGCCTTC------------------- 186
consensus_7965#0      TAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAAT 407
consensus_7965#1      TATCTGATAT-ATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTC 387
                         *                         *   *     *                    

consensus_7965#2      ------------------------------------------------------------
consensus_7965#3      ACTTCA------------------------------------------------------ 354
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      ATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATT 467
consensus_7965#1      ACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTA 447
                                                                                  

consensus_7965#2      ------------------------------------------------------------
consensus_7965#3      ------------------------------------------------------------
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      GACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACT 527
consensus_7965#1      GTTTGTATTGGTTGTGCTTAC--AACACCAAAATTAAAAAATATTCGTTATTCTAGTTGG 505
                                                                                  

consensus_7965#2      ------------------------------------------------------------
consensus_7965#3      ------------------------------------------------------------
consensus_7965#4      ------------------------------------------------------------
consensus_7965#0      GATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGAT 587
consensus_7965#1      TAATAACAGATAGTT--------------------------------------------- 520
                                                                                  

consensus_7965#2      --------------------------------------
consensus_7965#3      --------------------------------------
consensus_7965#4      --------------------------------------
consensus_7965#0      AGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA 625
consensus_7965#1      --------------------------------------