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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 571 fasta sequence
[TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA-GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA]
[-] EMBL CD133761 [TTAGGAAACGGAACGTATTATATTGGCTTTATTNTGAAATGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGGATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCC ]
[+] EMBL CD185596 [ AACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA]
[+] EMBL CD131605 [ CGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCANCAACAA TTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAAT ]
[+] EMBL SMAA25719 [ ATATTGGCTTTATTTTGAAGTGCNATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTT ]
[-] EMBL CD194504 [ AGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTT ]
consensusID : consensus_7966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA]
[-] EMBL CD135958 [TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7966#0 TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAAC 60
consensus_7966#1 ------------------------------------------------------------
consensus_7966#0 ACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTG 120
consensus_7966#1 ------------------------------------------------------------
consensus_7966#0 CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCG 180
consensus_7966#1 ------------------------------------------------------------
consensus_7966#0 CCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCA 240
consensus_7966#1 ------------------------------------------------------------
consensus_7966#0 TCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGG 300
consensus_7966#1 ------------------------------------------------------------
consensus_7966#0 CTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 360
consensus_7966#1 -TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 59
***********************************************************
consensus_7966#0 CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 420
consensus_7966#1 CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 119
************************************************************
consensus_7966#0 TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 480
consensus_7966#1 TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 179
************************************************************
consensus_7966#0 TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 540
consensus_7966#1 TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 239
************************************************************
consensus_7966#0 ATGCAGAGTAAGTTGATAGATAATTCAAAAA--- 571
consensus_7966#1 ATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA 273
********************* * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||