These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1019 fasta sequence [CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCATATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACCATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAAAACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTCTACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCACAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCTTCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGATTTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTTTTGCTAAAGAAAACTCTAT] [+] EMBL CD145244 [CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCATATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACCATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAAAACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTT ] [+] EMBL CD198510 [ ACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTCTACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATT ] [+] EMBL CD186448 [ CTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTGCTTTACATTCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTAT ] [+] EMBL CD169807 [ TATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTACCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCACAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCTTCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGATTTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTTTTGCTAAAGAAAACTCTAT] consensusID : consensus_7968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCTTAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGTNTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGATACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGGTTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGCAATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTGGAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG] [+] EMBL SM376 [CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCTTAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGTNTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGATACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGGTTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGCAATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTGGAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG] consensusID : consensus_7968#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTT] [-] EMBL CD078232 [ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7968#0 CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCAT 60 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 ATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACC 120 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 ATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAA 180 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 AACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTT---CATTCCA 237 consensus_7968#2 -----------------------ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCT 37 consensus_7968#1 -------------------------CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCT 35 ** * *** **** *** ** consensus_7968#0 TTGTATGTCTTTTATTCATAGA--TCTATATATAAACGTTTC-ATTGCT-TCCGTTTGGG 293 consensus_7968#2 TAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTC-ATTGCT-TCCGTTTGGG 95 consensus_7968#1 TAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGT 95 * ** * ** * ** * * **** *** * * * ** * consensus_7968#0 CACCTTGGCAGTATCACAGTCCTCAC----ATATATGTGGTGCCCTCTATTGTACCAAAA 349 consensus_7968#2 CACCTTGGCAGTATCACAGTCCTCAC----ATATATGTGGTGCCCTCTATTGTACCAAAA 151 consensus_7968#1 NTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGA 155 ***** * * * ** ** * * ** * ** ** * * consensus_7968#0 TA-ATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCT--- 405 consensus_7968#2 TA-ATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCT--- 207 consensus_7968#1 TACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGG 215 ** *** * ** * * * * * ** ** ** * * ** ** * * consensus_7968#0 ----TTACATT-CAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTC 460 consensus_7968#2 ----TTACATT-CAATAACTGTAACTCAACTTACGTGTTTCTT----------------- 245 consensus_7968#1 TTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGC 275 * * *** ** * * * * **** ** * consensus_7968#0 TACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTG 520 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 AATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTG 335 consensus_7968#0 TAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGT 580 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 GAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG---------------- 379 consensus_7968#0 TATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGT 640 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 TTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACG 700 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 TAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCA 760 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 CAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCT 820 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 TCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGAT 880 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 TTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATA 940 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 AAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTT 1000 consensus_7968#2 ------------------------------------------------------------ consensus_7968#1 ------------------------------------------------------------ consensus_7968#0 TTGCTAAAGAAAACTCTAT 1019 consensus_7968#2 ------------------- consensus_7968#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||