cluster # 7968

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Schistosoma mansoni
cluster # 7968 cluster # 7968 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7968#0 length = 1019 sequences # 4

consensus_7968#1 length = 379 sequences # 1
consensus_7968#2 length = 245 sequences # 1

consensusID : consensus_7968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1019
fasta sequence

                              [CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCATATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACCATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAAAACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTCTACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCACAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCTTCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGATTTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTTTTGCTAAAGAAAACTCTAT]

[+] EMBL CD145244             [CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCATATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACCATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAAAACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD198510             [                                                                                                                                                                                     ACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTGTATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTCTACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD186448             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTGCTTTACATTCCATAACTGTAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTAT                                                                                                                                                                                                                                                                                ]
[+] EMBL CD169807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTACCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCACAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCTTCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGATTTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTTTTGCTAAAGAAAACTCTAT]




>consensus_7968#0
CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCAT
ATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACC
ATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAA
AACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTTCATTCCATTG
TATGTCTTTTATTCATAGATCTATATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTG
GCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACG
CGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACT
GTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTCTACAACACTATGTCAAATGT
CTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTGTAACTCAAGTCACAAGTTTC
TTATTGATTGACTAATGGTTTACAACATTATGTTAAATGTTATCTTATGATTGTATTACT
AATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGTTTTTCTTCTTTATTTCATTA
TTAACAATGATATAGATATATCTATCTGTGTGTACGTACGTAAGAAGCTCTACTTTGTAA
CTGACTGACTGACTAAGATATATCTATCATCGTGATTCCACAAGTTCTATTTTACTTGTT
ATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCTTCCTCCCCCACCCTGGCAAC
TCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGATTTATGTTTATGATTAATTAT
TCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATT
TTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTTTTGCTAAAGAAAACTCTAT

consensusID : consensus_7968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCTTAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGTNTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGATACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGGTTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGCAATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTGGAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG]

[+] EMBL SM376                [CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCTTAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGTNTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGATACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGGTTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGCAATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTGGAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG]




>consensus_7968#1
CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCTTAATAAAATTGGTAATGGTAAGATT
TGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGTNTGTTTGGCTAAAGAAAACTCTATA
CTCCAGTCTCCATGACAACATCACACCCACACAGATACATACATNTGCAGCAATGAAACA
TNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGGTTGGTGATATTATTATTATTATCAN
CANCATTACTCGTAATATGCTNCTTATTNGGTTGCAATTGGCCTAATGTAAAAAAACGTT
TTGGGGTCATTGGTTACAAATACAAGTTNGGATTGGAGTNCCAATCAATTTTNTTGGGGT
ACTTAGGAAAATTAAAAGG

consensusID : consensus_7968#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTT]

[-] EMBL CD078232             [ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCACATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGTTTCTT]




>consensus_7968#2
ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCTTAATAAAATTGGTAATGGTAAGA
TTTTGGATATAAACGTTTCATTGCTTCCGTTTGGGCACCTTGGCAGTATCACAGTCCTCA
CATATATGTGGTGCCCTCTATTGTACCAAAATAATATAAACGCGTTTCTAATATGTCGAA
TATCTTTCCTTCTGGCTTTGGTTTGCTTTACATTCAATAACTGTAACTCAACTTACGTGT
TTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7968#0      CTTGCACAGGAAAAATGTATCCATTATTTTCTATTACATATAGTTTATCATACATTCCAT 60
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      ATATTGTGTATGTATTTCAGTGCCTATTATCATTATTCCAGTTGCTTATCATTTAACACC 120
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      ATCACATGTTATCTATTTAGACTATTTCAAAAGATATTGAATAAAGAGAACGAAGAAGAA 180
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      AACAAAACACTGTTATAACTCCATCTATTATTTATCCTTTTTTTTCTCTT---CATTCCA 237
consensus_7968#2      -----------------------ATTCTTGTTTGTTCCTTTATTTCATTCGAACATTCCT 37
consensus_7968#1      -------------------------CGAGGTTNGTTTCTTTATTTCATNCGAACATNCCT 35
                                                    **  *   *** ****       *** ** 

consensus_7968#0      TTGTATGTCTTTTATTCATAGA--TCTATATATAAACGTTTC-ATTGCT-TCCGTTTGGG 293
consensus_7968#2      TAATAAAATTGGTAATGGTAAGATTTTGGATATAAACGTTTC-ATTGCT-TCCGTTTGGG 95
consensus_7968#1      TAATAAAATTGGTAATGGTAAGATTTGGGNTNTAAAGAAAAAGATTNCCATATGCTTNGT 95
                      *  **    *  ** *  **    *     * ****       *** *  *  * ** * 

consensus_7968#0      CACCTTGGCAGTATCACAGTCCTCAC----ATATATGTGGTGCCCTCTATTGTACCAAAA 349
consensus_7968#2      CACCTTGGCAGTATCACAGTCCTCAC----ATATATGTGGTGCCCTCTATTGTACCAAAA 151
consensus_7968#1      NTGTTTGGCTAAAGAAAACTCTATACTCCAGTCTCCATGACAACATCACACCCACACAGA 155
                          *****   *  * * **   **     * *   **    * **      **  * *

consensus_7968#0      TA-ATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCT--- 405
consensus_7968#2      TA-ATATAAACGCGTTTCTAATATGTCGAATATCTTTCCTTCTGGCTTTGGTTTGCT--- 207
consensus_7968#1      TACATACATNTGCAGCAATGAAACATNCATNCTCATTACTCGTTGTTTNTGTCAGTTGGG 215
                      ** *** *   **     * * *  *  *   ** ** **  * * **  **  * *   

consensus_7968#0      ----TTACATT-CAATAACTGTAACTCAACTTACGTGTTTCTTACTGACTATCAGTGGTC 460
consensus_7968#2      ----TTACATT-CAATAACTGTAACTCAACTTACGTGTTTCTT----------------- 245
consensus_7968#1      TTGGTGATATTATTATTATTATCANCANCATTACTCGTAATATGCTNCTTATTNGGTTGC 275
                          * * ***   ** * * * *      ****  **    *                 

consensus_7968#0      TACAACACTATGTCAAATGTCTTTCCTCATAGCTTTGGTTTACAATACATGCCATAACTG 520
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      AATTGGCCTAATGTAAAAAAACGTTTTGGGGTCATTGGTTACAAATACAAGTTNGGATTG 335
                                                                                  

consensus_7968#0      TAACTCAAGTCACAAGTTTCTTATTGATTGACTAATGGTTTACAACATTATGTTAAATGT 580
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      GAGTNCCAATCAATTTTNTTGGGGTACTTAGGAAAATTAAAAGG---------------- 379
                                                                                  

consensus_7968#0      TATCTTATGATTGTATTACTAATCTATTATACTGTGATATTTGTTTTTTACCAGTTTAGT 640
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      TTTTCTTCTTTATTTCATTATTAACAATGATATAGATATATCTATCTGTGTGTACGTACG 700
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      TAAGAAGCTCTACTTTGTAACTGACTGACTGACTAAGATATATCTATCATCGTGATTCCA 760
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      CAAGTTCTATTTTACTTGTTATTGTAATCGATTCTGTTTGTTTTTTGTTTGTTTTGTTCT 820
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      TCCTCCCCCACCCTGGCAACTCATTATACTTTTTTTTATGGTTACAGATGAAGTCTTGAT 880
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      TTATGTTTATGATTAATTATTCTTGTTTGTTTCTTTATTTCATTCGAACATTCCTTAATA 940
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      AAATTGGTAATGGTAAGATTTTGGATATAAAAAAAAAGATTTCCATATGCTTTGTATGTT 1000
consensus_7968#2      ------------------------------------------------------------
consensus_7968#1      ------------------------------------------------------------
                                                                                  

consensus_7968#0      TTGCTAAAGAAAACTCTAT 1019
consensus_7968#2      -------------------
consensus_7968#1      -------------------