cluster # 7969

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Schistosoma mansoni
cluster # 7969 cluster # 7969 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7969#0 length = 1114 sequences # 2

consensus_7969#1 length = 658 sequences # 4

consensusID : consensus_7969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1114
fasta sequence

                              [CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCATAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGCCAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAAACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTATATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTGTAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGGCGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGATTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAACAAATGGACAAATACTTCTGATGAAT-GGCTGGGGCAACACANAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAATCACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGGACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCCTGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATC]

[+] EMBL AI977351             [CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCATAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGCCAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAAACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTATATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTGTAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGGCGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGATTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAACAAATGGACAAATACTTCTGATGAAT GGCTGGGGCAACACANAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD080315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tccaTTCTGATGAATGGGCTTGGGCAACACAAAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATTGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAATCACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGGACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCCTGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATC]




>consensus_7969#0
CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCA
TAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGC
CAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAA
ACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTAT
ATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTG
TAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGG
CGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGA
TTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAA
CAAATGGACAAATACTTCTGATGAATGGCTGGGGCAACACANAGTGGAAGGATGGCAAGA
AAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAAT
CACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGG
ACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCC
TGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATAT
TCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGAC
TGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATT
TCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATG
TCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAAC
ATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATG
GGGTCAGGGATGGGAGGACGAGAGCCAAACAATC

consensusID : consensus_7969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 658
fasta sequence

                              [CCTCCGAGGCCANAATTCGGCACGAGGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG]

[+] EMBL CD082028             [CCTCCGAGGCCANAATTCGGCACGAGGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACCATAAATAGATAA ]
[-] EMBL CD075642             [                                        GCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCACCAATAAATAGATAAG]
[-] EMBL CD074235             [                                                                                                                                    AGAGTCCTCATTTAGAAGAAATTTACCAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGGGTAGTTCAGGTCGTTATTGTTATTTATCATTCCATGGGTTATTATTATTATTCTGAGTTCTTTTTAAAACATTGACTTGACTTCATTTTTTATTTAAAAATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAAAGCCAAACAATCGCAGAGACAAGTTTATATTGTTAGTTCCAACTATTGTTTTTTTTCCGTTTTGTCAAACATTCCATTAAACCTTGATACATTATTTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTGGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCCCCACCAAGAAATAGA    ]
[+] EMBL CD185566             [                                                                                                                                                                                                                   CGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG]




>consensus_7969#1
CCTCCGAGGCCANAATTCGGCACGAGGCGAGTCAGCAGCAGCAACAACAACCTTATGGTG
GGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATT
AACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGA
TCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTA
GTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTT
TTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACT
GACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATT
GTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACA
TTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGT
TTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTG
AATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7969#0      CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCA 60
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      TAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGC 120
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAA 180
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      ACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTAT 240
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      ATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTG 300
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      TAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGG 360
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGA 420
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      TTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAA 480
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CAAATGGACAAATACTTCTGATGAATGGCTGGGGCAACACANAGTGGAAGGATGGCAAGA 540
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      AAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAAT 600
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGG 660
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      ACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCC 720
consensus_7969#1      ----------------------------------------CCTCCGAG---GCCANAATT 17
                                                                ***  *   **** *   

consensus_7969#0      TGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATAT 780
consensus_7969#1      CGGCACGA----------GGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATAT 67
                       ** * **          *  ***************************************

consensus_7969#0      TCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGAC 840
consensus_7969#1      TCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGAC 127
                      ************************************************************

consensus_7969#0      TGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATT 900
consensus_7969#1      TGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATT 187
                      ************************************************************

consensus_7969#0      TCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATG 960
consensus_7969#1      TCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATG 247
                      ************************************************************

consensus_7969#0      TCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAAC 1020
consensus_7969#1      TCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAAC 307
                      ************************************************************

consensus_7969#0      ATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATG 1080
consensus_7969#1      ATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATG 367
                      ****************************************** *****************

consensus_7969#0      GGGTCAGGGATGGGAGGACGAGAGCCAAACAATC-------------------------- 1114
consensus_7969#1      GGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTT 427
                      **********************************                          

consensus_7969#0      ------------------------------------------------------------
consensus_7969#1      CCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTT 487
                                                                                  

consensus_7969#0      ------------------------------------------------------------
consensus_7969#1      GTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTG 547
                                                                                  

consensus_7969#0      ------------------------------------------------------------
consensus_7969#1      ATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATAT 607
                                                                                  

consensus_7969#0      ---------------------------------------------------
consensus_7969#1      AAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG 658