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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1114 fasta sequence
[CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCATAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGCCAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAAACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTATATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTGTAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGGCGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGATTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAACAAATGGACAAATACTTCTGATGAAT-GGCTGGGGCAACACANAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAATCACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGGACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCCTGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATC]
[+] EMBL AI977351 [CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCATAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGCCAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAAACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTATATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTGTAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGGCGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGATTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAACAAATGGACAAATACTTCTGATGAAT GGCTGGGGCAACACANAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATC ]
[+] EMBL CD080315 [ tccaTTCTGATGAATGGGCTTGGGCAACACAAAGTGGAAGGATGGCAAGAAAGTAATGCTCGTTCAGCGATTGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAATCACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGGACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCCTGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATC]
consensusID : consensus_7969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 658 fasta sequence
[CCTCCGAGGCCANAATTCGGCACGAGGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG]
[+] EMBL CD082028 [CCTCCGAGGCCANAATTCGGCACGAGGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACCATAAATAGATAA ]
[-] EMBL CD075642 [ GCAACAACAACCTTATGGTGGGAATATTCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGACTGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCACCAATAAATAGATAAG]
[-] EMBL CD074235 [ AGAGTCCTCATTTAGAAGAAATTTACCAGTAATTATACTATTCTTTGATCTCATTTCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGGGTAGTTCAGGTCGTTATTGTTATTTATCATTCCATGGGTTATTATTATTATTCTGAGTTCTTTTTAAAACATTGACTTGACTTCATTTTTTATTTAAAAATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAAAGCCAAACAATCGCAGAGACAAGTTTATATTGTTAGTTCCAACTATTGTTTTTTTTCCGTTTTGTCAAACATTCCATTAAACCTTGATACATTATTTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTGGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCCCCACCAAGAAATAGA ]
[+] EMBL CD185566 [ CGTGGATGAATTTTGACTTCTTATGTGTAGTTCATGTCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAACATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATGGGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTTCCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTTGTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTGATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATATAAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7969#0 CCCAACTATTAGAGCTGAAATCACACAACTTTATATTTTTGTGCTACAACAACATTATCA 60
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 TAAGACAGGTCGGAGCTCATTTAAGGCCCAAAGTTACATTTAATGAAAGATGAATCCCGC 120
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 CAACTTGCTATCAGCCGCAAAGTCTGGAACCACTAGCAATATACTGGATTTTTTACGAAA 180
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 ACCTGTCAGCATTTTGAGGCTTGTTTCACTCCTAGTATCTGTGATAGTCTTTGGTTCTAT 240
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 ATCATCAGGTTGTCATACGCATCAAGGTATTTGCATTTTCGGCACAACTTCTAGTGCTTG 300
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 TAATCTCCCCGTTGCAATCGGTGTCTTTGCCTTTCTTGGAGAAATTATTTTTCTCGTTGG 360
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 CGATTTTATGTTTGATTCAATTTCCAACATTAAAAGGCGGAAAAATATTGTAATTGGTGA 420
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 TTTGGGGTTCTCAGGTCTATGGACATTTCTATGGTTTGTGAGCTTTTGCCTACTTGCTAA 480
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 CAAATGGACAAATACTTCTGATGAATGGCTGGGGCAACACANAGTGGAAGGATGGCAAGA 540
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 AAGTAATGCTCGTTCAGCGATGGTCTTCTCCTTCTTATCCATTGCAATTTGGGGTGGAAT 600
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 CACATTTTTCGCATTACAACGGTTTCGAATGGGTCAAGCTGGTCTCACTCCAGAAGAAGG 660
consensus_7969#1 ------------------------------------------------------------
consensus_7969#0 ACTAGGTGAGGCTGGTTCAACTATGGATCCAAATACTGGTGTTCCAGGTCAGCCATATCC 720
consensus_7969#1 ----------------------------------------CCTCCGAG---GCCANAATT 17
*** * **** *
consensus_7969#0 TGGTATGATGTCTGATCCGATGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATAT 780
consensus_7969#1 CGGCACGA----------GGCGAGTCAGCAGCAGCAACAACAACCTTATGGTGGGAATAT 67
** * ** * ***************************************
consensus_7969#0 TCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGAC 840
consensus_7969#1 TCAACAGCCACCTGTAGGTGGTGTCGGCGGTCAATATTATGGACCAACGTATTAACAGAC 127
************************************************************
consensus_7969#0 TGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATT 900
consensus_7969#1 TGAAAAGAGTCCTCATCTAGAAGAAATTTAACAGTAATTATACTATTCTTTGATCTCATT 187
************************************************************
consensus_7969#0 TCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATG 960
consensus_7969#1 TCATTTTATGATTTTAAGTTGAAACGTGGATGAATTTTGACTTCTTATGTGTAGTTCATG 247
************************************************************
consensus_7969#0 TCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAAC 1020
consensus_7969#1 TCGTTATTGTTATTTATCATTCCATTGGTTATTATTATTATTCTGAGTTCTTTTTATAAC 307
************************************************************
consensus_7969#0 ATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTNTTTCATTACTGACAATG 1080
consensus_7969#1 ATTGACTTGACTTCATTTTTTATTTATATATTGCTCTACTTTTTTTCATTACTGACAATG 367
****************************************** *****************
consensus_7969#0 GGGTCAGGGATGGGAGGACGAGAGCCAAACAATC-------------------------- 1114
consensus_7969#1 GGGTCAGGGATGGGAGGACGAGAGCCAAACAATCGCAGAGACAAGTCTATATTGTTAGTT 427
**********************************
consensus_7969#0 ------------------------------------------------------------
consensus_7969#1 CCAACTATTGTTTCTCTTCCGTTCTGTCAAACATTCCATTAAACCTTGATACATTATCTT 487
consensus_7969#0 ------------------------------------------------------------
consensus_7969#1 GTGAATTTATATTTAAGACATTTTTCGAACATATATGTACTTATATTACTTGTTTCAGTG 547
consensus_7969#0 ------------------------------------------------------------
consensus_7969#1 ATGTTGTCCCTTTTATGTTCAGTCGCTTTTAGTCGTATTTAGCATAATATTTGAATATAT 607
consensus_7969#0 ---------------------------------------------------
consensus_7969#1 AAACAAATATGCATTAAAAAAAATGCATATCACCAACAATAAATAGATAAG 658
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||