cluster # 7971

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Schistosoma mansoni
cluster # 7971 cluster # 7971 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7971#0 length = 673 sequences # 5

consensus_7971#1 length = 152 sequences # 1

consensusID : consensus_7971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 673
fasta sequence

                              [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT]

[+] EMBL CD071559             [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD198217             [ TCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATCCTACTACATTACCTTCAGTTGAAGAATTAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD066128             [               GAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCT                                                                                                                ]
[+] EMBL CD065248             [                                                                                    AAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT]
[-] EMBL CD189708             [                                                                                                                                                                                                                                               AGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACG                                                                             ]




>consensus_7971#0
ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGT
GATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGT
GATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGAT
GACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAA
GTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAG
GGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCT
GTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGA
AGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACT
TTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTC
AGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTC
TCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACT
TTCAAGTCACAGT

consensusID : consensus_7971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence

                              [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT]

[+] EMBL CD198016             [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT]




>consensus_7971#1
ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGAT
TTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGA
ATGCTAATCAAGCTGGCGCATTTTTCGCTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7971#0      ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGT 60
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGT 120
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGAT 180
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAA 240
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAG 300
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCT 360
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGA 420
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      AGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTT-AC 479
consensus_7971#1      ------------------------------------ATTGTTACACTATCCGTGCTTCAC 24
                                                          ***    *  **      *** **

consensus_7971#0      TTTTTCCACACTTAG---AGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTAT 536
consensus_7971#1      TTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCT 84
                      ******* **   **   *    **  **      *    * **   * ** *  **  *

consensus_7971#0      -TTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGAC-GCTA 594
consensus_7971#1      ATTTCACTGCCATAGCATGTTCC------CCGGACGGCCTGAATGCTAATCAAGCTGGCG 138
                       ***** *     ** *****         ** *   * *    ***  *    * *   

consensus_7971#0      CGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACA 654
consensus_7971#1      CATTTTTCGCTCCT---------------------------------------------- 152
                      * *** ** *  *                                               

consensus_7971#0      TTCACTTTCAAGTCACAGT 673
consensus_7971#1      -------------------