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Schistosoma mansoni
cluster # 7974 cluster # 7974       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7974#0 length = 859 sequences # 4  
consensus_7974#1 length = 594 sequences # 2  

consensusID : consensus_7974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 859
fasta sequence
                              [TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA]

[+] EMBL CD197567             [TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AI975858             [                                                                                                                                                                                                                                                                                                                              CACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA]
[+] EMBL CD178679             [                                                                                                                                                                                                                                                                                                                                           GAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGATGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACAC                                                                                                                                                                                            ]
[-] EMBL CD065299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTG                                                                                                                                                                                                       ]


>consensus_7974#0 TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAA TACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCT ACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTT ACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTA TTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACA CAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAAT CAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAA TGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTA TCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGA TAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTAT ACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTG TTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCG AATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGG CTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATAC GTTTTGGTTATCACTTATA



consensusID : consensus_7974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence
                              [ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC]

[+] EMBL AI975391             [ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACG                                                                             ]
[-] EMBL CD129502             [                              TAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTAGAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTACCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC]


>consensus_7974#1 ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCA CAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTAT ATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATA ATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCA GATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAA ATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATG CATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCAT TTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACG AACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCA ACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7974#0      TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGC--ATGATGTTTTG 58
consensus_7974#1      ----ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTG 56
                          * * * **   ****  *  **   *    *  *   * * *   *** *** ***

consensus_7974#0      AATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAG 118
consensus_7974#1      CTCACAAAGACCAATTTACT--ATCTG----CGAAAGCAAACTCCTAGGAGAGTTCGGCG 110
                         ** *    ** * * **  ****     * **     *     *      **  * *

consensus_7974#0      CTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTC 178
consensus_7974#1      CCGACGCTATAT--------TATAAATTTT--GATG-CAGATG----GAACAGAAATGGC 155
                      *     *  ***         * *******   **  *****     ****  ***   *

consensus_7974#0      TTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTC 238
consensus_7974#1      TTCCCT----TTTGTGTTTAGGATTAATAATT--TTATTCGCGTTACTGTCCACAGACTC 209
                      ** ***    *** ***** * *  *   **   *  **  * *  *    **  * ***

consensus_7974#0      TATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGA 298
consensus_7974#1      -ATTTGTTGAGGAGAT-------TTCTAAAG-----ATTTGTCAGAT-----ACACTCGT 251
                       **** * *   * *        * ** ***      * ***  ***     * * * * 

consensus_7974#0      CACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAA 358
consensus_7974#1      CGTACGA--AATTCTTGTC-CATCAACTTCGGAAAAGC-------ATTTATCATTA-GAA 300
                      *  *  *  * * * **** **   **** **  ***        * ** * *  * ***

consensus_7974#0      ATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAAC 418
consensus_7974#1      ATCATTATTTC----TCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCC 356
                      **** *    *    * ** *    *****  *   *    * *  ** **   *    *

consensus_7974#0      AATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGT 478
consensus_7974#1      TATGC--ATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGAT 414
                       ***    ***   *  *  **    * * *  * * *  ** *** *   *     * *

consensus_7974#0      TATCGTTTACCACCTGG--TGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACAT 536
consensus_7974#1      CTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGAT 474
                        ** ***  *   **   *  *  *   *  * **    *   ***     * * * **

consensus_7974#0      TTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGT--TT 594
consensus_7974#1      TACACGAACC---TAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTT 531
                      *  *  **     * *** **  ** *   * **    * *      *  ***  *  **

consensus_7974#0      ACCTATACGAT-TATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAAC 653
consensus_7974#1      ATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCT-TGCCAGGGGTGACC 590
                      *  *   * *   ** *  *     * *  *** **  ***     **    ** *** *

consensus_7974#0      AAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACG 713
consensus_7974#1      GAGC-------------------------------------------------------- 594
                       *                                                          

consensus_7974#0      AATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAAT 773
consensus_7974#1      ------------------------------------------------------------
                                                                                  

consensus_7974#0      TTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACG 833
consensus_7974#1      ------------------------------------------------------------
                                                                                  

consensus_7974#0      TCAATACGTTTTGGTTATCACTTATA 859
consensus_7974#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)