These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 859 fasta sequence [TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA] [+] EMBL CD197567 [TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCC ] [+] EMBL AI975858 [ CACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA] [+] EMBL CD178679 [ GAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGATGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACAC ] [-] EMBL CD065299 [ ACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTG ] consensusID : consensus_7974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC] [+] EMBL AI975391 [ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACG ] [-] EMBL CD129502 [ TAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTAGAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTACCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7974#0 TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGC--ATGATGTTTTG 58 consensus_7974#1 ----ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTG 56 * * * ** **** * ** * * * * * * *** *** *** consensus_7974#0 AATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAG 118 consensus_7974#1 CTCACAAAGACCAATTTACT--ATCTG----CGAAAGCAAACTCCTAGGAGAGTTCGGCG 110 ** * ** * * ** **** * ** * * ** * * consensus_7974#0 CTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTC 178 consensus_7974#1 CCGACGCTATAT--------TATAAATTTT--GATG-CAGATG----GAACAGAAATGGC 155 * * *** * ******* ** ***** **** *** * consensus_7974#0 TTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTC 238 consensus_7974#1 TTCCCT----TTTGTGTTTAGGATTAATAATT--TTATTCGCGTTACTGTCCACAGACTC 209 ** *** *** ***** * * * ** * ** * * * ** * *** consensus_7974#0 TATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGA 298 consensus_7974#1 -ATTTGTTGAGGAGAT-------TTCTAAAG-----ATTTGTCAGAT-----ACACTCGT 251 **** * * * * * ** *** * *** *** * * * * consensus_7974#0 CACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAA 358 consensus_7974#1 CGTACGA--AATTCTTGTC-CATCAACTTCGGAAAAGC-------ATTTATCATTA-GAA 300 * * * * * * **** ** **** ** *** * ** * * * *** consensus_7974#0 ATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAAC 418 consensus_7974#1 ATCATTATTTC----TCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCC 356 **** * * * ** * ***** * * * * ** ** * * consensus_7974#0 AATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGT 478 consensus_7974#1 TATGC--ATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGAT 414 *** *** * * ** * * * * * * ** *** * * * * consensus_7974#0 TATCGTTTACCACCTGG--TGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACAT 536 consensus_7974#1 CTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGAT 474 ** *** * ** * * * * * ** * *** * * * ** consensus_7974#0 TTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGT--TT 594 consensus_7974#1 TACACGAACC---TAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTT 531 * * ** * *** ** ** * * ** * * * *** * ** consensus_7974#0 ACCTATACGAT-TATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAAC 653 consensus_7974#1 ATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCT-TGCCAGGGGTGACC 590 * * * * ** * * * * *** ** *** ** ** *** * consensus_7974#0 AAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACG 713 consensus_7974#1 GAGC-------------------------------------------------------- 594 * consensus_7974#0 AATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAAT 773 consensus_7974#1 ------------------------------------------------------------ consensus_7974#0 TTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACG 833 consensus_7974#1 ------------------------------------------------------------ consensus_7974#0 TCAATACGTTTTGGTTATCACTTATA 859 consensus_7974#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||