These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence [GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAACATGGAACATTTATTCACGGAGAATCTATCTATGTTATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAATGACNAGAAACANNAGAANAAGACCCAGTNNCTACATAGAAACGGNCAGAAAGTCAAAAATAGCATTTAAGAAAGCTGNTGTAGTATATTATTGCAGCACTNAAGGTATGTAATNGGACTCTACTATCTGCCATCACATNCTCTATTATATAA] [+] EMBL CD081842 [GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAACATGGAACATTTATTCACGGAGAATCTATCTATGTTATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAATGACNAGAAACANNAGAANAAGACCCAGTNNCTACATAGAAACGGNCAGAAAGTCAAAAATAGCATTTAAGAAAGCTGNTGTAGTATATTATTGCAGCACTNAAGGTATGTAATNGGACTCTACTATCTGCCATCACATNCTCTATTATATAA] consensusID : consensus_7975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [AAAACTGAGAAAAGCTGCCAAAGCATCCATTCCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAGGCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTAGTTGAAATGTACCAACACACTCTAACTATACGTCCGTTGCCAAGAAATTGTCCTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAATGCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAAAATCTGTTTCTGGTAAACTGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATTTGAATTGAAACATGGAAC] [+] EMBL CD082891 [AAAACTGAGAAAAGCTGCCAAAGCATCCATTCCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAGGCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTAGTTGAAATGTACCAACACACTCTAACTATACGTCCGTTGCCAAGAAATTGTCCTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAATGCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAAAATCTGTTTCTGGTAAACTGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATTTGAATTGAAACATGGAAC] [+] EMBL CD157776 [ AAATAAATGGACTGAACCCCTACAAAGAACACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGAATTGCACTTTAACTTACCATTCACGTCACACTGCATTAt ] consensusID : consensus_7975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [ATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTAGCAAAATTTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCCCCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTTTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATTAT] [-] EMBL CD076476 [ATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTAGCAAAATTTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCCCCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTTTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATT ] [-] EMBL CD075561 [ AGAAATGCANAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTCTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTCTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTCTACTTATCCTGTCCATCTACATTCCTCTTATATATATAATTAT] consensusID : consensus_7975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GGTACATAAAACATTATTCTAACAACAAAGCCTAATAATAACGATTACCTAAACGATTCCGAATAGCATCTAAGAGTTTTTCATCTGTATCCAAAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTTGATGACGTACGGGGTTCCTTTGGTTCTGGCTTAGGAATGGATGCTTTGGCAGCTTTTCTCAGTTTTAACTTTTCTTGCCTTTTGTGTCGTTTCCTTTGGGACTTTGTTAGCTTTTCAGTGCATTTTGCATCAACCTGAATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGGACTGCAGCAGTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTTTTCCTGCAAATGGAAGCCGTGAGAGGCTTACTACTTTTGA] [+] EMBL CD187131 [GGTACATAAAACATTATTCTAACAACAAAGCCTAATAATAACGATTACCTAAACGATTCCGAATAGCATCTAAGAGTTTTTCATCTGTATCCAAAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTTGATGACGTACGGGGTTCCTTTGGTTCTGGCTTAGGAATGGATGCTTTGGCAGCTTTTCTCAGTTTTAACTTTTCTTGCCTTTTGTGTCGTTTCCTTTGGGACTTTGTTAGCTTTTCAGTGCATTTTGCATCAACCTGAATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGGACTGCAGCAGTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTTTTCCTGCAAATGGAAGCCGTGAGAGGCTTACTACTTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7975#0 GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGAC 60 consensus_7975#2 ------------------------------------------------------------ consensus_7975#1 ------------------------------------------------------------ consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 CTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCG 120 consensus_7975#2 ------------------------------------------------------------ consensus_7975#1 ------------------------------------------------------------ consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 ATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTC 180 consensus_7975#2 ------------------------------------------------------------ consensus_7975#1 ------------------------------------------------------------ consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 AAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAG 240 consensus_7975#2 ------------------------------------------------------------ consensus_7975#1 ------------------------------------------------------------ consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 GGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAAC 300 consensus_7975#2 ------------------------------------------------------------ consensus_7975#1 -----------------------------AAAACTGAGAAAAGCTGCCAAAGCATCCATT 31 consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 ATGGAACATTTATTCACGGAGAATCTATCTATGTTATGT-TCCTACTTAAAAATCCAAAG 359 consensus_7975#2 -----------------------------------ATGT-TCCTACTTAAAAATCCAAAG 24 consensus_7975#1 CCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAG 91 consensus_7975#3 ------------------------GGTACATAAAACATTATTCTAACAACAAAGCCTAAT 36 * * ** * * * ** consensus_7975#0 A---AAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTA 416 consensus_7975#2 A---AAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTA 81 consensus_7975#1 GCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTA 151 consensus_7975#3 AATAACGATTACCTAAACGATTCCGAATAGCA--TCTAAGA-GTTTTTCATCTGTATCCA 93 * * ** * * * ** ** * * * * consensus_7975#0 GAC--AGTACTCCAAC---ACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATC 471 consensus_7975#2 GAC--AGTACTCCAAC---ACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATC 136 consensus_7975#1 GTTGAAATGTACCAAC---ACACTCTAACTATACGTCCGTT--GCCAAGAA---ATTGTC 203 consensus_7975#3 AAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTT--GATGACGTACGGGGTTC 151 * * * ** * * * * ** consensus_7975#0 CCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTA---- 527 consensus_7975#2 CCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTA---- 192 consensus_7975#1 CTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAAT 263 consensus_7975#3 CTTTGGTTCTGGCTTAGGAATGGAT-GCTTTGGCAGCT----TTTCTCAGTTTTAA---- 202 * * * ** ** * * ** * consensus_7975#0 GCAAAATCTGGTAAACCATTGAAAAA----GAAGTC----CAAAGTTGCAACAGTTCACC 579 consensus_7975#2 GCAAAATTTGGTAAACCATTGAAAAA----GAAGTC----CAAAGTTGCAACAGTTCCCC 244 consensus_7975#1 GCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAA 323 consensus_7975#3 -----CTTTTCTTGCCTTTTGTGTCGT-------TTCCTTTGGGACTTTGTTAGCTTTTC 250 * * *** * ** * consensus_7975#0 GTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTG-TCAAG 638 consensus_7975#2 GTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTG-TCAAG 303 consensus_7975#1 AATCTGTTTCTGGTAAACTGCTAAACGGTAAAGA--AATTAAAACTGAAATTTGCTCACT 381 consensus_7975#3 AGTGCATTTTGCATCAACCTG-AATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGG 309 ** * * ** * ** * * ** * consensus_7975#0 AGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAAT 698 consensus_7975#2 AGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAAT 363 consensus_7975#1 ACACGGACCTGAT---AATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACT 438 consensus_7975#3 ACTGCAGCA-GTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTT 368 * * * * ** * * * consensus_7975#0 GACNAGAAACANNAGAANAAGACCCAGT-NNCTACATAGAAACGGNCAGAAAGTC----- 752 consensus_7975#2 GACAAGAAACAAAAGAAAAAGACCAAGT-TTA-ACATAAGAAACGGCAGAAAGTTCA--- 418 consensus_7975#1 GTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTT 498 consensus_7975#3 TTCCTGCAAATGGAAGCCGTGAGAGGCT-TACTACTTTTGA------------------- 408 * * * * * consensus_7975#0 AAAAATAGCAT-----TT-AAGAAAGCTGNTGTAGTATAT-TATTG-CA-GCACTNAAGG 803 consensus_7975#2 AAAAATAGCAT-----TTTAAGAAAGCTGTTGTAGTATAT-TATTGACA-GCACTAAAGG 471 consensus_7975#1 TGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGG 558 consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 -T-ATGTAATN-GGACTCTACTA--TCTGCCA--TCACATNCTCTAT---TATATAA--- 850 consensus_7975#2 -TTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATTA 530 consensus_7975#1 ATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATT 618 consensus_7975#3 ------------------------------------------------------------ consensus_7975#0 ------------------ consensus_7975#2 T----------------- 531 consensus_7975#1 TGAATTGAAACATGGAAC 636 consensus_7975#3 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||