|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence
[GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAACATGGAACATTTATTCACGGAGAATCTATCTATGTTATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAATGACNAGAAACANNAGAANAAGACCCAGTNNCTACATAGAAACGGNCAGAAAGTCAAAAATAGCATTTAAGAAAGCTGNTGTAGTATATTATTGCAGCACTNAAGGTATGTAATNGGACTCTACTATCTGCCATCACATNCTCTATTATATAA]
[+] EMBL CD081842 [GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAACATGGAACATTTATTCACGGAGAATCTATCTATGTTATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAATGACNAGAAACANNAGAANAAGACCCAGTNNCTACATAGAAACGGNCAGAAAGTCAAAAATAGCATTTAAGAAAGCTGNTGTAGTATATTATTGCAGCACTNAAGGTATGTAATNGGACTCTACTATCTGCCATCACATNCTCTATTATATAA]
consensusID : consensus_7975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[AAAACTGAGAAAAGCTGCCAAAGCATCCATTCCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAGGCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTAGTTGAAATGTACCAACACACTCTAACTATACGTCCGTTGCCAAGAAATTGTCCTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAATGCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAAAATCTGTTTCTGGTAAACTGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATTTGAATTGAAACATGGAAC]
[+] EMBL CD082891 [AAAACTGAGAAAAGCTGCCAAAGCATCCATTCCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAGGCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTAGTTGAAATGTACCAACACACTCTAACTATACGTCCGTTGCCAAGAAATTGTCCTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAATGCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAAAATCTGTTTCTGGTAAACTGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGACCTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATTTGAATTGAAACATGGAAC]
[+] EMBL CD157776 [ AAATAAATGGACTGAACCCCTACAAAGAACACTGTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAGGGAATTGCACTTTAACTTACCATTCACGTCACACTGCATTAt ]
consensusID : consensus_7975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence
[ATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTAGCAAAATTTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCCCCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTTTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATTAT]
[-] EMBL CD076476 [ATGTTCCTACTTAAAAATCCAAAGAAAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTAGCAAAATTTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCCCCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTTTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATT ]
[-] EMBL CD075561 [ AGAAATGCANAACGTCAAGCCTCTGATATTTACCAGATGGATGTAGACAGTACTCCAACACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATCCCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTAGCAAAATCTGGTAAACCATTGAAAAAGAAGTCCAAAGTTGCAACAGTTCACCGTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTGTCAAGAGAAAGTCATCATCCAAAAGTATCTTTGATTCTTTATTTCAACCTTCAACTGGAGCAAATGACAAGAAACAAAAGAAAAAGACCAAGTCTAACATAAGAAACGGCAGAAAGTTCAAAAAATAGCATTTTAAGAAAGCTGTTGTAGTATATTATTGACAGCACTAAAGGTTATGTAATTTGGACTCTACTTATCCTGTCCATCTACATTCCTCTTATATATATAATTAT]
consensusID : consensus_7975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[GGTACATAAAACATTATTCTAACAACAAAGCCTAATAATAACGATTACCTAAACGATTCCGAATAGCATCTAAGAGTTTTTCATCTGTATCCAAAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTTGATGACGTACGGGGTTCCTTTGGTTCTGGCTTAGGAATGGATGCTTTGGCAGCTTTTCTCAGTTTTAACTTTTCTTGCCTTTTGTGTCGTTTCCTTTGGGACTTTGTTAGCTTTTCAGTGCATTTTGCATCAACCTGAATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGGACTGCAGCAGTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTTTTCCTGCAAATGGAAGCCGTGAGAGGCTTACTACTTTTGA]
[+] EMBL CD187131 [GGTACATAAAACATTATTCTAACAACAAAGCCTAATAATAACGATTACCTAAACGATTCCGAATAGCATCTAAGAGTTTTTCATCTGTATCCAAAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTTGATGACGTACGGGGTTCCTTTGGTTCTGGCTTAGGAATGGATGCTTTGGCAGCTTTTCTCAGTTTTAACTTTTCTTGCCTTTTGTGTCGTTTCCTTTGGGACTTTGTTAGCTTTTCAGTGCATTTTGCATCAACCTGAATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGGACTGCAGCAGTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTTTTCCTGCAAATGGAAGCCGTGAGAGGCTTACTACTTTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7975#0 GAGGCGGCACGAGGCTAAACGGTAAAGAAATTAAAACTGAAATTTGCTCACTACACGGAC 60
consensus_7975#2 ------------------------------------------------------------
consensus_7975#1 ------------------------------------------------------------
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 CTGATAATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACTGTCAGATTTCG 120
consensus_7975#2 ------------------------------------------------------------
consensus_7975#1 ------------------------------------------------------------
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 ATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTTTGACTTGGCTC 180
consensus_7975#2 ------------------------------------------------------------
consensus_7975#1 ------------------------------------------------------------
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 AAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGGATCGTGTCGAG 240
consensus_7975#2 ------------------------------------------------------------
consensus_7975#1 ------------------------------------------------------------
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 GGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGATTTTGAATTGAAAC 300
consensus_7975#2 ------------------------------------------------------------
consensus_7975#1 -----------------------------AAAACTGAGAAAAGCTGCCAAAGCATCCATT 31
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 ATGGAACATTTATTCACGGAGAATCTATCTATGTTATGT-TCCTACTTAAAAATCCAAAG 359
consensus_7975#2 -----------------------------------ATGT-TCCTACTTAAAAATCCAAAG 24
consensus_7975#1 CCTAAGCCAGAACCAAAGGAACCCCGTACGTCATCAAGTGTCGTACTTCCAGAACGTAAG 91
consensus_7975#3 ------------------------GGTACATAAAACATTATTCTAACAACAAAGCCTAAT 36
* * ** * * * **
consensus_7975#0 A---AAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTA 416
consensus_7975#2 A---AAATCTCTATAAGAAATGCAAAACGTCAAGCCTCTGATATTTACCAGATGGATGTA 81
consensus_7975#1 GCTTATGCATCATCTTTGGATACAGATGAAAAACTCTTAGATGCTATTCGGAATCGTTTA 151
consensus_7975#3 AATAACGATTACCTAAACGATTCCGAATAGCA--TCTAAGA-GTTTTTCATCTGTATCCA 93
* * ** * * * ** ** * * * *
consensus_7975#0 GAC--AGTACTCCAAC---ACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATC 471
consensus_7975#2 GAC--AGTACTCCAAC---ACCTCATAAAGACAAATGTGCTAAGGCAGTAGTTGATCATC 136
consensus_7975#1 GTTGAAATGTACCAAC---ACACTCTAACTATACGTCCGTT--GCCAAGAA---ATTGTC 203
consensus_7975#3 AAGATGATGCATAAGCTTTACGTTCTGGAAGTACGACACTT--GATGACGTACGGGGTTC 151
* * * ** * * * * **
consensus_7975#0 CCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGCTAAATCACTA---- 527
consensus_7975#2 CCATACCTATGTCTATTGATTCATTTGATCCTGAATTTAAAATTGGTAAATCACTA---- 192
consensus_7975#1 CTGTAAGTCTGATCAAGGATCTTTTCCCGTCATCAGTCAATGTTCGTATCCCACAGAAAT 263
consensus_7975#3 CTTTGGTTCTGGCTTAGGAATGGAT-GCTTTGGCAGCT----TTTCTCAGTTTTAA---- 202
* * * ** ** * * ** *
consensus_7975#0 GCAAAATCTGGTAAACCATTGAAAAA----GAAGTC----CAAAGTTGCAACAGTTCACC 579
consensus_7975#2 GCAAAATTTGGTAAACCATTGAAAAA----GAAGTC----CAAAGTTGCAACAGTTCCCC 244
consensus_7975#1 GCAATTCTCGATTTGCTTTTGCGAAATTTCGAAATCACGATGAACTGGTTGCAGCTCAAA 323
consensus_7975#3 -----CTTTTCTTGCCTTTTGTGTCGT-------TTCCTTTGGGACTTTGTTAGCTTTTC 250
* * *** * ** *
consensus_7975#0 GTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTG-TCAAG 638
consensus_7975#2 GTGACATTCCGGATCCGCTAGTAAATATAAAATACCAGTTGAAAGAAAAGAGTG-TCAAG 303
consensus_7975#1 AATCTGTTTCTGGTAAACTGCTAAACGGTAAAGA--AATTAAAACTGAAATTTGCTCACT 381
consensus_7975#3 AGTGCATTTTGCATCAACCTG-AATAGTTTCATTCTGATTCTTAGAAAGTCCTGCTTTGG 309
** * * ** * ** * * ** *
consensus_7975#0 AGAAAGTCATCATCCCAAAGTATCTTTGATTCTTTATTTCAACCTTTCACTGGNAGCAAT 698
consensus_7975#2 AGAAAGTCATCATCCAAAAGTATCTTTGATTTTTTATTTCAACCTTCAACTGGAGCAAAT 363
consensus_7975#1 ACACGGACCTGAT---AATGTTGATAAAAATAAATGGACTGAACCCCTACAAAGAAAACT 438
consensus_7975#3 ACTGCAGCA-GTTTCTGAAGTCGCTTAGTCTTATCATGCTTTTTTGATTTCGAAAATTTT 368
* * * * ** * * *
consensus_7975#0 GACNAGAAACANNAGAANAAGACCCAGT-NNCTACATAGAAACGGNCAGAAAGTC----- 752
consensus_7975#2 GACAAGAAACAAAAGAAAAAGACCAAGT-TTA-ACATAAGAAACGGCAGAAAGTTCA--- 418
consensus_7975#1 GTCAGATTTCGATATGCGTTCTCTTCATGTTCTTCATTTGCCTCGGGCGACCACTCGTTT 498
consensus_7975#3 TTCCTGCAAATGGAAGCCGTGAGAGGCT-TACTACTTTTGA------------------- 408
* * * * *
consensus_7975#0 AAAAATAGCAT-----TT-AAGAAAGCTGNTGTAGTATAT-TATTG-CA-GCACTNAAGG 803
consensus_7975#2 AAAAATAGCAT-----TTTAAGAAAGCTGTTGTAGTATAT-TATTGACA-GCACTAAAGG 471
consensus_7975#1 TGACTTGGCTCAAGTATTTCCGAAAGCTGTAGGTATTCGTATGCCGACATATGATGATGG 558
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 -T-ATGTAATN-GGACTCTACTA--TCTGCCA--TCACATNCTCTAT---TATATAA--- 850
consensus_7975#2 -TTATGTAATTTGGACTTTACTTATCCTGTCCATTTACATTCCTTTTATATATATAATTA 530
consensus_7975#1 ATCGTGTCGAGGGTATTGCACTTTAACTTACCATTCACGTCACACTGCATTAAAAGAATT 618
consensus_7975#3 ------------------------------------------------------------
consensus_7975#0 ------------------
consensus_7975#2 T----------------- 531
consensus_7975#1 TGAATTGAAACATGGAAC 636
consensus_7975#3 ------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||