cluster # 7977

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Schistosoma mansoni
cluster # 7977 cluster # 7977 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7977#0 length = 492 sequences # 1

consensus_7977#1 length = 360 sequences # 5

consensusID : consensus_7977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TATATTGTTAAGCAGTTAATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACTGTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTCCTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTGAACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCATTAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATTATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTGTTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA]

[+] EMBL SMAA69900            [TATATTGTTAAGCAGTTAATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACTGTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTCCTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTGAACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCATTAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATTATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTGTTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA]




>consensus_7977#0
TATATTGTTAAGCAGTTAATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATG
GATAGAGAATTATTGACTGTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTG
CTGCGACCTCAGCAATTCCTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTC
TTAAAAATACATCCCCAAATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGC
AAGTTCTGCAAATTCGTGAACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCA
TTTGAATAGATTTCCCATTAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCA
TTCCACATTATATTCATTATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAA
TTCCGCAAGTTGGCCCTGTTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATT
TCACCTTGTGGA

consensusID : consensus_7977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 360
fasta sequence

                              [TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTGAA]

[-] EMBL AI976840             [TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTC                                  ]
[+] EMBL AI067388             [                      GAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTACCGTTTCATACATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTGAA]
[+] EMBL AI068099             [                       AAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAAT       ]
[+] EMBL AI067317             [                       AAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGT                ]
[-] EMBL AA958285             [                                                                                                                 ATATA TGTTAACTAGATAA TCAG TCAG AATAC AAATAAACTGG AAGAGAA TATTGACTG TACACCAATA TA TTTTGTTCATAA GACTTAACATTTGCTGCGACATCAGCAATTCCTACTC CCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTT AAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCT             ]




>consensus_7977#1
TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAA
AAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATT
GTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGT
TACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCT
ACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAAT
ATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7977#0      ------------------------------------------------------------
consensus_7977#1      TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAA 60
                                                                                  

consensus_7977#0      ------------------------------------------TATATTGTTAAGCAGTTA 18
consensus_7977#1      AAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATT 120
                                                                * *** ***    *  * 

consensus_7977#0      ATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACT 78
consensus_7977#1      GTTAA--CTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACT 178
                       ** *    *** *  * * *************** *** **** ***************

consensus_7977#0      GTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTC 138
consensus_7977#1      GTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTC 238
                      **  *********************  ********************** **********

consensus_7977#0      CTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAA 198
consensus_7977#1      CTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAA 298
                      ****************** *****************************************

consensus_7977#0      ATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTG 258
consensus_7977#1      ATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTG 358
                      ************* ******** *********************** *************

consensus_7977#0      AACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCAT 318
consensus_7977#1      AA---------------------------------------------------------- 360
                      **                                                          

consensus_7977#0      TAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATT 378
consensus_7977#1      ------------------------------------------------------------
                                                                                  

consensus_7977#0      ATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTG 438
consensus_7977#1      ------------------------------------------------------------
                                                                                  

consensus_7977#0      TTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA 492
consensus_7977#1      ------------------------------------------------------