cluster # 7982

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Schistosoma mansoni
cluster # 7982 cluster # 7982 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7982#0 length = 643 sequences # 3

consensus_7982#1 length = 351 sequences # 2
consensus_7982#2 length = 336 sequences # 1

consensusID : consensus_7982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 643
fasta sequence

                              [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGACTGAAAAATATCCAAAAGCAAGAAATGAGTTTTACGATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGATCGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC]

[+] EMBL CD088077             [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAG                                                                                                                                                                                                            ]
[+] EMBL CD088065             [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTACTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAG                                                                                                                                                                                                                  ]
[+] EMBL AI975710             [                                                                                                                                                                                                                                                                                                                                  AATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTATTATCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGACTGAAAAATATCCAAAAGCAAGAAATGAGTTTTACGATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGATCGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC]




>consensus_7982#0
TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAA
AACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAA
AATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCT
TGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAA
ACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATA
ACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC
ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAA
GTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAG
GAAGCTGAATGACTGAAAAATATCCAAAAGCAAGAAATGAGTTTTACGATCCTGAAAGGA
AACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGATCGGTTTAGTACT
GTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC

consensusID : consensus_7982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 351
fasta sequence

                              [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCGATTACTGGT]

[+] EMBL AI395103             [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATA               ]
[-] EMBL CD137378             [                                                                      AGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAAAATCATTGGCTTCGCATACGCAACCAATTAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCGATTACTGGT]




>consensus_7982#1
TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATA
CGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAA
CAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAAT
AACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCT
GTACATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATG
CATGCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCGATTACTGGT

consensusID : consensus_7982#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATACATTTGTTCT]

[+] EMBL AI395240             [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATACATTTGTTCT]




>consensus_7982#2
TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATA
CGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGA
AAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTT
CAGGAAGCTGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTG
AGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCC
TCNCAAAGCGTCTCACACATCNCATACATTTGTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7982#1      ------------------------------------------------------------
consensus_7982#2      ------------------------------------------------------------
consensus_7982#0      TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAA 60
                                                                                  

consensus_7982#1      ------------------------------------------------------------
consensus_7982#2      ------------------------------------------------------------
consensus_7982#0      AACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAA 120
                                                                                  

consensus_7982#1      ------------------------------------------------------------
consensus_7982#2      ------------------------------------------------------------
consensus_7982#0      AATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCT 180
                                                                                  

consensus_7982#1      ------------------------------------------------------------
consensus_7982#2      ------------------------------------------------------------
consensus_7982#0      TGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAA 240
                                                                                  

consensus_7982#1      ---------------------------------------------------------TTT 3
consensus_7982#2      ---------------------------------------------------------TTT 3
consensus_7982#0      ACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATA 300
                                                                                * 

consensus_7982#1      TTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 63
consensus_7982#2      TTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 63
consensus_7982#0      ACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 360
                             *  * ************************************************

consensus_7982#1      ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAA 123
consensus_7982#2      ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAA--------AATTCAATAG 115
consensus_7982#0      ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAA--------AATTCAATAG 412
                      ************************************    **        *   *** * 

consensus_7982#1      CCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAAC 183
consensus_7982#2      CAAGAAA-AGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAAT 174
consensus_7982#0      CAAGAAA-AGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAAT 471
                      * *** * **  *** ****   ***   * *** *   *   *****   *   * ** 

consensus_7982#1      TCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTA 243
consensus_7982#2      TGTCTTCAGGAAGC-TGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGT- 232
consensus_7982#0      TGTCTTCAGGAAGC--TGAATGACTGAAAAATATC-CAAAAGCAAGAAATGAGTTTTACG 528
                      * * *  *                  **     **    *  * *   *           

consensus_7982#1      CATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCAT 303
consensus_7982#2      ----CACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAA 288
consensus_7982#0      ATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGAT 588
                              *   *             *  **   *     *  *  * **        * 

consensus_7982#1      GCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCG-----ATTACTGGT-- 351
consensus_7982#2      TTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATAC-----ATTTGTTCT-- 336
consensus_7982#0      CGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC 643
                                           *  *      *   *         **     *