These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 643 fasta sequence [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGACTGAAAAATATCCAAAAGCAAGAAATGAGTTTTACGATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGATCGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC] [+] EMBL CD088077 [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAG ] [+] EMBL CD088065 [TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAAAACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAAAATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCTTGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAAACTGTTTTCCTACACTGTACTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATAACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAG ] [+] EMBL AI975710 [ AATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTATTATCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGACTGAAAAATATCCAAAAGCAAGAAATGAGTTTTACGATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGATCGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC] consensusID : consensus_7982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCGATTACTGGT] [+] EMBL AI395103 [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATA ] [-] EMBL CD137378 [ AGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTACATGTGCCACTAACAACAAAATCATTGGCTTCGCATACGCAACCAATTAAGTCCATGCATGCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCGATTACTGGT] consensusID : consensus_7982#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATACATTTGTTCT] [+] EMBL AI395240 [TTTTTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGCATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAAAATTCAATAGCAAGAAAAGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAATTGTCTTCAGGAAGCTGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAATTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATACATTTGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7982#1 ------------------------------------------------------------ consensus_7982#2 ------------------------------------------------------------ consensus_7982#0 TTCTACTTTATTTTACCGATGTTTCCATCAAGACATGCTGTTTGTACCTGGATTTCTTAA 60 consensus_7982#1 ------------------------------------------------------------ consensus_7982#2 ------------------------------------------------------------ consensus_7982#0 AACAGCTTCACGATTAAACCGTATAAGCGTTCCCAAAATCAGACAGTTATCATTTTCTAA 120 consensus_7982#1 ------------------------------------------------------------ consensus_7982#2 ------------------------------------------------------------ consensus_7982#0 AATAGTGAATGGAAAATTCCACCGTTTTAATCAAAACGAGTTCTCACAACAGTGATGTCT 180 consensus_7982#1 ------------------------------------------------------------ consensus_7982#2 ------------------------------------------------------------ consensus_7982#0 TGCATACGAGCTTAGCTAGCACCACTCGGTTTAAAGTAATAACATAAACCCACATTACAA 240 consensus_7982#1 ---------------------------------------------------------TTT 3 consensus_7982#2 ---------------------------------------------------------TTT 3 consensus_7982#0 ACTGTTTTCCTACACTGTTCTCAGAAAACTGGAAATCCGAACCACACATTAGTGTGAATA 300 * consensus_7982#1 TTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 63 consensus_7982#2 TTTTTTTTTTTTTAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 63 consensus_7982#0 ACGAAAATAATATAACAAGCAAAATACGTAACTTATATTTAATTAACTTAGTCCATACGC 360 * * ************************************************ consensus_7982#1 ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTAATAAATAGACTCTAGCACAACAA 123 consensus_7982#2 ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAA--------AATTCAATAG 115 consensus_7982#0 ATTTTCAAGTCTGAAATCGTGACTGCGTCTTTTTCTCTGGAA--------AATTCAATAG 412 ************************************ ** * *** * consensus_7982#1 CCAGATACAGCGTCACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAAC 183 consensus_7982#2 CAAGAAA-AGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAAT 174 consensus_7982#0 CAAGAAA-AGTATCATGATTAGTAGCAGACGAAAAGACATTCAAAATGATTTTTTAAAAT 471 * *** * ** *** **** *** * *** * * ***** * * ** consensus_7982#1 TCTTTCGAATTCATATTCTCCTCCCAAAGCGTCTCACACATCCCATACATTTGTTCTGTA 243 consensus_7982#2 TGTCTTCAGGAAGC-TGAATGAAATAAATAGACTCTAGCACCCCAACCAGATACAGCGT- 232 consensus_7982#0 TGTCTTCAGGAAGC--TGAATGACTGAAAAATATC-CAAAAGCAAGAAATGAGTTTTACG 528 * * * * ** ** * * * * consensus_7982#1 CATGTGCCACTAACAACAGAATCATTGGCTTCGCATACGCAACCACATAAGTCCATGCAT 303 consensus_7982#2 ----CACGATTGAGAGCGTTCAAAATGCATTGTGAAATGCACTCAAATAACTCTTTCGAA 288 consensus_7982#0 ATCCTGAAAGGAAACATACTTCATGAGGATTTAAACTACAAAACTCAGAAGCACGGAGAT 588 * * * ** * * * * ** * consensus_7982#1 GCAACGTATGGTTTGTTGGTAGTATGGTCAATACCAGCG-----ATTACTGGT-- 351 consensus_7982#2 TTCATATTCTCCTCNCAAAGCGTCTCACACATCNCATAC-----ATTTGTTCT-- 336 consensus_7982#0 CGGTTTAGTACTGTCTTATCGGAATAAATACTACTACAGTCCAAGTTACCATTGC 643 * * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||