cluster # 7984

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Schistosoma mansoni
cluster # 7984 cluster # 7984 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7984#0 length = 621 sequences # 3
consensus_7984#1 length = 530 sequences # 1

consensus_7984#2 length = 399 sequences # 1
consensus_7984#3 length = 294 sequences # 1

consensusID : consensus_7984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 621
fasta sequence

                              [AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCTGGGAGC-ATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGAAACGAATNGTT]

[+] EMBL CD141941             [AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACCTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGATTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCTGGGAGC ATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGAAACGAATNGTT]
[-] EMBL CD062365             [      CTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCGAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAG                                                                                                                                                                                          ]
[-] EMBL AW017132             [                                                                              AACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCT GGAGCAATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAATAAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGA           ]




>consensus_7984#0
AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAA
ATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGG
CATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGC
CAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACT
TAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAA
CGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCC
CAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAA
AAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCG
GAATCGGCACAGAACGGAGCATATCTGGGAGCATATCACATACTATAGTATGCAAGACAT
TCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATCAC
CCAAACCCGAAACGAATNGTT

consensusID : consensus_7984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGATAGTTTCATAGCTGATAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCTGTGAGATCTGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGTAATTAAACTACTCGTAATCATGTTCCTTTTCATTGTGAGCTTTATTTTGACCCTTGAACTATTATTGTACGATTTTCCATTCTTGAGTTATACCCAGTCTATTAATTACTGCTCTCCCTATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTATTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGATTCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCTAGGCGGAAGCAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAATAATTCGCTACT]

[+] EMBL CD202049             [GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGATAGTTTCATAGCTGATAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCTGTGAGATCTGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGTAATTAAACTACTCGTAATCATGTTCCTTTTCATTGTGAGCTTTATTTTGACCCTTGAACTATTATTGTACGATTTTCCATTCTTGAGTTATACCCAGTCTATTAATTACTGCTCTCCCTATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTATTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGATTCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCTAGGCGGAAGCAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAATAATTCGCTACT]




>consensus_7984#1
GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGATAGTTTC
ATAGCTGATAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCTGTGAGATCT
GTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGTAATTAAACTA
CTCGTAATCATGTTCCTTTTCATTGTGAGCTTTATTTTGACCCTTGAACTATTATTGTAC
GATTTTCCATTCTTGAGTTATACCCAGTCTATTAATTACTGCTCTCCCTATTCACAGCCG
CCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTATTGGTACGATGTGGTCAGTT
TGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGATTCATACAGCAGAGGCTGTTA
TTGGTGTTTTGAACTTAACTGGCTGGTCTAGGCGGAAGCAGGATCGATAAGCGTTCTAGA
CTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAATAATTCGCTACT

consensusID : consensus_7984#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGACGGACTCGGGGCTGGCTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGGCAGTCATTTTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGGACCCGACCGATAATGATCGTTCCGTACGGGGTGATATAGCAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGACTAGGTGTTT]

[+] EMBL CD136791             [TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGACGGACTCGGGGCTGGCTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGGCAGTCATTTTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGGACCCGACCGATAATGATCGTTCCGTACGGGGTGATATAGCAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGACTAGGTGTTT]




>consensus_7984#2
TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGACGGACTCGG
GGCTGGCTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGGCAGTCATTTTT
GCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGGACCCGACCGATAA
TGATCGTTCCGTACGGGGTGATATAGCAATGATGCTGTTTCAATGTGGGATTGTACAGTT
GTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGT
TTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGGTGGTTGTT
GTTAGTTGGTGTGTAGTGCGTGGAAAGGACTAGGTGTTT

consensusID : consensus_7984#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [CCAGGACGCGCACTTCATCCTATTTGGGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACTCAGTACTGTTCGCTTCAAACGCCATCGCGTACATATATGAATTTCATTATTTTATGAAATTTATTTTCATCCCGTGTTATATCTTGTGGCCGAGTGGATGCCCAGTTAATGTATGACGTGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTACGTATCGGTC]

[+] EMBL CD130366             [CCAGGACGCGCACTTCATCCTATTTGGGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACTCAGTACTGTTCGCTTCAAACGCCATCGCGTACATATATGAATTTCATTATTTTATGAAATTTATTTTCATCCCGTGTTATATCTTGTGGCCGAGTGGATGCCCAGTTAATGTATGACGTGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTACGTATCGGTC]




>consensus_7984#3
CCAGGACGCGCACTTCATCCTATTTGGGACTCGTCAGCTGGATTTGTCCGCATCTCAGAG
TTGATGTTCACTCTGAGACTCGGACTCAGTACTGTTCGCTTCAAACGCCATCGCGTACAT
ATATGAATTTCATTATTTTATGAAATTTATTTTCATCCCGTGTTATATCTTGTGGCCGAG
TGGATGCCCAGTTAATGTATGACGTGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTG
ATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTACGTATCGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7984#2      --------TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGAC 52
consensus_7984#3      --------------------------------CCAGGACGCGCACTTCATCCTATTTG-- 26
consensus_7984#1      -------GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGA 53
consensus_7984#0      AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAA 60
                                                                           *      

consensus_7984#2      GGACTCGG-GGCTGG--CTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGG 109
consensus_7984#3      GGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACT 86
consensus_7984#1      TAGTTTCATAGCTGA--TAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCT 111
consensus_7984#0      ATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGG 120
                                * *               * * *        *                  

consensus_7984#2      CAGTCATT-TTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGG- 167
consensus_7984#3      CAGTACTG-TTCGCTTCAAACGCCATCGCGTACA-TATATGAATTTCATTATTTTATGA- 143
consensus_7984#1      GTGAGATC-TGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGT 170
consensus_7984#0      CATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGC 180
                               *  *      *             *     *       *            

consensus_7984#2      -ACCCGACCGATAA---TGATCGTTCCGTACGGGGTGA----TATAGCAATGATGCTGTT 219
consensus_7984#3      -AAT-------TTA---TTTTCATCCCGTGTTATATCT----TGTGGCCGAGTGGATGCC 188
consensus_7984#1      AATTAAACTACTCG---TAATCATGTTCCTTTTCATTG----TGAGCTTTATTTTGACCC 223
consensus_7984#0      CAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACT 240
                       *               *  ** *           *                        

consensus_7984#2      TCAATGTGGGATTGTA-CAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATG 278
consensus_7984#3      CAGTTAATGTATGACG-TGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAA 247
consensus_7984#1      TTGAACTATTATTGTA-CGATT-TTCCATTCTTGAGTTATACCCAGTCTATTAATTACTG 281
consensus_7984#0      TAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAA 300
                                                      *                *          

consensus_7984#2      TGGTATTG-ATGATAGATTGTGT------TTTTCTAGCG-ACGTGTTTGTTTCCGTAATA 330
consensus_7984#3      CAGTGACA-CACGAAAACCGTACGAG---CAGTCTAGAGTACGTATCGGTC--------- 294
consensus_7984#1      CTCTCCCT-ATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTA 340
consensus_7984#0      CGTCAACACATTTAGTAATATGTTTC-TGGATTCCATAATTGATAGGAATCTTCCGTTTC 359
                                                      **         *     *          

consensus_7984#2      ACTGTAAGA-GTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGA 389
consensus_7984#3      ------------------------------------------------------------
consensus_7984#1      TTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGAT 400
consensus_7984#0      CCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATG-GCTCCGCTGAATGAGCC 418
                                                                                  

consensus_7984#2      CTAGGTGTTT-------------------------------------------------- 399
consensus_7984#3      ------------------------------------------------------------
consensus_7984#1      TCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCT--AGGCGGAAG 458
consensus_7984#0      AAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTT 478
                                                                                  

consensus_7984#2      ------------------------------------------------------------
consensus_7984#3      ------------------------------------------------------------
consensus_7984#1      CAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAA 518
consensus_7984#0      CGGAATCGGCACAGAACGGAGCATATCTGGGAGCATATCACATACTATAGTATGCAAGAC 538
                                                                                  

consensus_7984#2      ------------------------------------------------------------
consensus_7984#3      ------------------------------------------------------------
consensus_7984#1      TAATTCGCTACT------------------------------------------------ 530
consensus_7984#0      ATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATC 598
                                                                                  

consensus_7984#2      -----------------------
consensus_7984#3      -----------------------
consensus_7984#1      -----------------------
consensus_7984#0      ACCCAAACCCGAAACGAATNGTT 621