These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 521 fasta sequence [GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTCATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN] [+] EMBL CD123946 [GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTCATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN] [+] EMBL CD127620 [ ggtgATATTCTAGCTGAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTANATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGT ] [+] EMBL CD192413 [ agacagaAGACTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATC ] [+] EMBL CD192390 [ agacagaAGACTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAA ] consensusID : consensus_7987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTACTATTCACAATCGTGGAT] [-] EMBL CD065341 [AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTACTATTCACAATCGTGGAT] [+] EMBL CD129616 [ ATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7987#0 GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTC 60 consensus_7987#1 ------------------------------------------------------------ consensus_7987#0 ATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAG 120 consensus_7987#1 --------------------AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAG 40 **************************************** consensus_7987#0 GAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCG 180 consensus_7987#1 GAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCG 100 ************************************************************ consensus_7987#0 CTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCA 240 consensus_7987#1 CTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCA 160 ************************************************************ consensus_7987#0 TTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGAC 300 consensus_7987#1 TTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGAC 220 ******************************* *************************** consensus_7987#0 GGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTA 360 consensus_7987#1 GGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTA 280 ************************************************************ consensus_7987#0 CGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAAT-G 419 consensus_7987#1 CGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCG 340 ********************************************* *********** * consensus_7987#0 GTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAAT 479 consensus_7987#1 GTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAAT 400 ************************************************************ consensus_7987#0 ACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN 521 consensus_7987#1 ACCTA-CTAT---TCACAATCGTGGAT--------------- 423 ***** **** ** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||