cluster # 7987

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Schistosoma mansoni
cluster # 7987 cluster # 7987 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7987#0 length = 521 sequences # 4

consensus_7987#1 length = 423 sequences # 2

consensusID : consensus_7987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 521
fasta sequence

                              [GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTCATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN]

[+] EMBL CD123946             [GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTCATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN]
[+] EMBL CD127620             [                                                                                                                                                                                                                                                               ggtgATATTCTAGCTGAAATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTANATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGT                                                    ]
[+] EMBL CD192413             [                                                                                                                                                                                                                                                                                                                                agacagaAGACTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAACGCATCATTATC                  ]
[+] EMBL CD192390             [                                                                                                                                                                                                                                                                                                                                agacagaAGACTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTAACTATAA                              ]




>consensus_7987#0
GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTC
ATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAG
GAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCG
CTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCA
TTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGAC
GGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTA
CGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAATGG
TGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATA
CCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN

consensusID : consensus_7987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence

                              [AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTACTATTCACAATCGTGGAT]

[-] EMBL CD065341             [AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCGGTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTACTATTCACAATCGTGGAT]
[+] EMBL CD129616             [                                                                     ATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAATAT                                                                                                                                                                                                                                                ]




>consensus_7987#1
AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAGGAAGAAATTGAACGTCGTTG
GCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCGCTGAAAGCAATCGAGCAACT
TCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCATTCAGTTCACAAGAGGATAA
TATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGACGGTGTGTTCAAATCAGTTGA
TATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTACGCAAATATCCAACAGTTTT
TTATACTGGACGAGATGAATTAGATGTATATCGTCAACCGGTGTCGTTTTTCCAATTGTC
ATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAATACCTACTATTCACAATCGTG
GAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7987#0      GAAATAAGAAACGCACCATGGACGCCCGGGGATGATTATTTATTGATAAATTCCGTTGTC 60
consensus_7987#1      ------------------------------------------------------------
                                                                                  

consensus_7987#0      ATGGTATGTAACCTTACAGAAGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAG 120
consensus_7987#1      --------------------AGTCTATCACACTGTAAGATTCGCTGTTCATTTTACGGAG 40
                                          ****************************************

consensus_7987#0      GAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCG 180
consensus_7987#1      GAAGAAATTGAACGTCGTTGGCGTGATTTATTATTCGATCCAATCGTTTCTAGCACTGCG 100
                      ************************************************************

consensus_7987#0      CTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCA 240
consensus_7987#1      CTGAAAGCAATCGAGCAACTTCCTTCGTTTATGAAATCTCAACTAGATAGACAAATACCA 160
                      ************************************************************

consensus_7987#0      TTCAGTTCACAAGAGGATAATATTATAGCTCAAATTTCTCTCTCTGATGTCTATCCAGAC 300
consensus_7987#1      TTCAGTTCACAAGAGGATAATATTATAGCTCCCATTTCTCTCTCTGATGTCTATCCAGAC 220
                      *******************************  ***************************

consensus_7987#0      GGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTA 360
consensus_7987#1      GGTGTGTTCAAATCAGTTGATATACATAGTCTGAATCCCTCCATATTTACGGAAATTTTA 280
                      ************************************************************

consensus_7987#0      CGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATTTATATCGTCAAT-G 419
consensus_7987#1      CGCAAATATCCAACAGTTTTTTATACTGGACGAGATGAATTAGATGTATATCGTCAACCG 340
                      ********************************************* ***********  *

consensus_7987#0      GTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAAT 479
consensus_7987#1      GTGTCGTTTTTCCAATTGTCATTGCATCATCGTAAAAGATGGTGTAAAGTTGAAGTCAAT 400
                      ************************************************************

consensus_7987#0      ACCTAACTATAACGCATCATTATCGACTTCATCAGATGTCAN 521
consensus_7987#1      ACCTA-CTAT---TCACAATCGTGGAT--------------- 423
                      ***** ****    **  **  * **