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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7988 cluster # 7988       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7988#0 length = 549 sequences # 5  
consensus_7988#1 length = 190 sequences # 1  

consensusID : consensus_7988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 549
fasta sequence
                              [TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT-CTGG-ATAACTT-TA-CTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTG]

[+] EMBL CD167812             [TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCA TCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT CTGG ATAACTT TA CTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTG]
[+] EMBL CD167809             [                                   TAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCCGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGAGATGACTCTGGATAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTTTGAGATGACTCTGGATAACTTTACTGACCACATTGTGTGATGACT CCGG AT                                                            ]
[+] EMBL CD167814             [                                                                                                         TAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCCGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGAT                                                                                                                                                                                                                                                                                ]
[-] EMBL CD167800             [                                                                                                          AACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCAGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCCTGGAATAACTTCTANCTGgg                                              ]
[-] EMBL CD167815             [                                                                                                          AACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCACATTCTGTGATGACTTTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATA                                                                                                                                                                                                                                                                                                                  ]


>consensus_7988#0 TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGA TGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCG CATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACT TTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT CTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTC TGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACT GATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGA TAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGA TGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCG CATTCTGTG



consensusID : consensus_7988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence
                              [TCGGTCACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGATCGCAT]

[+] EMBL CD167785             [TCGGTCACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGATCGCAT]


>consensus_7988#1 TCGGTCACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGA CTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCAT TCTGTGATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTA CTGATCGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7988#0      TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGA 60
consensus_7988#1      ------------------------------------------------------------
                                                                                  

consensus_7988#0      TGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCG 120
consensus_7988#1      ------------------------------------------------------------
                                                                                  

consensus_7988#0      CATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACT 180
consensus_7988#1      ------------------------------------------------------------
                                                                                  

consensus_7988#0      TTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT 240
consensus_7988#1      ------------------------------------------------------------
                                                                                  

consensus_7988#0      CTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTC 300
consensus_7988#1      ------------------------------------------------------------
                                                                                  

consensus_7988#0      TGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACT 360
consensus_7988#1      -------------------------------------------------------TCGGT 5
                                                                             *   *

consensus_7988#0      GATCGCATTCTGTGA-TGACTCTGGATAACTTTACTG-ATCGCATTCTGTGATGACTCTG 418
consensus_7988#1      CACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTG 65
                       * * ********** ********************* **********************

consensus_7988#0      GATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGT 478
consensus_7988#1      GATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGT 125
                      ************************************************************

consensus_7988#0      GATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGAT 538
consensus_7988#1      GATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGAT 185
                      *************************** ********************************

consensus_7988#0      CGCATTCTGTG 549
consensus_7988#1      CGCAT------ 190
                      *****      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)