These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 549 fasta sequence [TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT-CTGG-ATAACTT-TA-CTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTG] [+] EMBL CD167812 [TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCA TCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT CTGG ATAACTT TA CTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTG] [+] EMBL CD167809 [ TAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCCGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGAGATGACTCTGGATAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTTTGAGATGACTCTGGATAACTTTACTGACCACATTGTGTGATGACT CCGG AT ] [+] EMBL CD167814 [ TAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCCGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGAT ] [-] EMBL CD167800 [ AACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCAGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCCTGGAATAACTTCTANCTGgg ] [-] EMBL CD167815 [ AACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCACATTCTGTGATGACTTTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATA ] consensusID : consensus_7988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TCGGTCACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGATCGCAT] [+] EMBL CD167785 [TCGGTCACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGATCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7988#0 TAACTCTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGA 60 consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 TGACTCTGGATAACTTTACTAATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCG 120 consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACT 180 consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 TTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACT 240 consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTC 300 consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 TGTGATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACT 360 consensus_7988#1 -------------------------------------------------------TCGGT 5 * * consensus_7988#0 GATCGCATTCTGTGA-TGACTCTGGATAACTTTACTG-ATCGCATTCTGTGATGACTCTG 418 consensus_7988#1 CACCCCATTCTGTGAATGACTCTGGATAACTTTACTGGATCGCATTCTGTGATGACTCTG 65 * * ********** ********************* ********************** consensus_7988#0 GATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGT 478 consensus_7988#1 GATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGATCGCATTCTGT 125 ************************************************************ consensus_7988#0 GATGACTCTGGATAACTTTACTGATCGCATTCTGTGATGACTCTGGATAACTTTACTGAT 538 consensus_7988#1 GATGACTCTGGATAACTTTACTGATCGTATTCTGTGATGACTCTGGATAACTTTACTGAT 185 *************************** ******************************** consensus_7988#0 CGCATTCTGTG 549 consensus_7988#1 CGCAT------ 190 ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||