cluster # 7989

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Schistosoma mansoni
cluster # 7989 cluster # 7989 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7989#0 length = 424 sequences # 2
consensus_7989#1 length = 299 sequences # 1

consensus_7989#2 length = 244 sequences # 2
consensus_7989#3 length = 138 sequences # 1

consensusID : consensus_7989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [CGGTACCCCAAAAACTTCTGAGCATCACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTACTGTGGGCGACGCCGAAAGAGCCTTGGAGACTATTCTCCCAGTCTACCAGCACACTCCAATCCAAAAATACGCTCGCTGGCTTACATCTCTGGAACGACTACACCCTTCGTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAAC]

[+] EMBL CD128775             [CGGTACCCCAAAAACTTCTGAGCATCACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTACTGTGGGCGACGCCGAAAGAGCCTTGGAGACTATTCTCCCAGTCTACCAGCACACTCCAATCCAAAAATACGCTCGCTGGCTTACATCTCTGGAACGACTACACCCTTCGTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAAC]
[+] EMBL CD092083             [tcatcaaCCAACCAC TCTTGTCGCCGCCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCA                                                                                                                                                                                        ]




>consensus_7989#0
CGGTACCCCAAAAACTTCTGAGCATCACCACCGTCTTCGCTCCTGAAACTCATCAACCAA
CCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACA
CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACA
GTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCA
ACCACTACTGTGGGCGACGCCGAAAGAGCCTTGGAGACTATTCTCCCAGTCTACCAGCAC
ACTCCAATCCAAAAATACGCTCGCTGGCTTACATCTCTGGAACGACTACACCCTTCGTCA
CAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAAC
CAAC

consensusID : consensus_7989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [AAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTGATGCATTAATATCGTTTTCTTTTTGATGATCTGACTGAGCTTCTAGTAGTTGCATTCTGGTTTGAGAAAGATCTGTTTCTAACTGATTTACTTGAGCAGTGAGTTCTTGGACGCGATAGGTTGAATTGTATGCTGTCTCTNTTTCTCGGGCAACTTCTTCGGACAAC]

[+] EMBL CD200379             [AAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTGATGCATTAATATCGTTTTCTTTTTGATGATCTGACTGAGCTTCTAGTAGTTGCATTCTGGTTTGAGAAAGATCTGTTTCTAACTGATTTACTTGAGCAGTGAGTTCTTGGACGCGATAGGTTGAATTGTATGCTGTCTCTNTTTCTCGGGCAACTTCTTCGGACAAC]




>consensus_7989#1
AAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCAC
ATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCA
CCGTCTTCGCTGATGCATTAATATCGTTTTCTTTTTGATGATCTGACTGAGCTTCTAGTA
GTTGCATTCTGGTTTGAGAAAGATCTGTTTCTAACTGATTTACTTGAGCAGTGAGTTCTT
GGACGCGATAGGTTGAATTGTATGCTGTCTCTNTTTCTCGGGCAACTTCTTCGGACAAC

consensusID : consensus_7989#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 244
fasta sequence

                              [CACAGNCCACTCAACAAAAAGCCAAACCAACACCACCGTCTTCGCCCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAGAACTATACTCCCGTATAGTCAGTACACTCCAATTCTCAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACGATCCACCGTCGTCGCTGTCTATGACTATGCA]

[-] EMBL CD122547             [CACAGNCCACTCAACAAAAAGCCAAACCAACACCACCGTCTTCGCCCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACA                                                                                                                                                   ]
[-] EMBL CD087822             [               ccatcGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAGAACTATACTCCCGTATAGTCAGTACACTCCAATTCTCAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACGATCCACCGTCGTCGCTGTCTATGACTATGCA]




>consensus_7989#2
CACAGNCCACTCAACAAAAAGCCAAACCAACACCACCGTCTTCGCCCCTGAAACTCATCA
ACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAGAACTATACTCCCGTATAGTCA
GTACACTCCAATTCTCAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCT
TCACAGTCCACTCTCTCCATCGCCAAACCAACGATCCACCGTCGTCGCTGTCTATGACTA
TGCA

consensusID : consensus_7989#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [CTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGATGAGTTTCATGATCGAAGACGGTGGTGTTGGTTTGGTGATGG]

[+] EMBL CD155276             [CTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGATGAGTTTCATGATCGAAGACGGTGGTGTTGGTTTGGTGATGG]




>consensus_7989#3
CTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGG
TTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGATGAGTTTCATGATCGAAGACGGTG
GTGTTGGTTTGGTGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7989#0      ----CGGTACCCCA-AAAACTTCTGAGCATCACCACCGTCTTCGCTCCTGAAACTCATCA 55
consensus_7989#2      CACAGNCCACTCAACAAAAAGCCAAACCAACACCACCGTCTTCGCCCCTGAAACTCATCA 60
consensus_7989#1      ------------------------------------------------------------
consensus_7989#3      ------------------------------------------------------------
                                                                                  

consensus_7989#0      ACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCA 115
consensus_7989#2      ACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAGAACTATACTCCCGTATAGTCA 120
consensus_7989#1      ------------------------------------AAAAACTATACTCCCGTCTAGTCA 24
consensus_7989#3      --------------------------CTGACTAGACGGGAG-TATAGTTTT-TGTGGCGG 32
                                                             *  **** *    * * *   

consensus_7989#0      GTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCT 175
consensus_7989#2      GTACACTCCAATTCTCAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCT 180
consensus_7989#1      GTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCT 84
consensus_7989#3      CGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGA-GTTTCAGGA-GCGAAGACGGTGGT 90
                         *  *         **      * * * * * *  * **  **  * *  **     *

consensus_7989#0      TCACAGTCCACTCTCTCCATCGCCAAACCAACA--CCACCGTCTTCGCT-CCTGAAACTC 232
consensus_7989#2      TCACAGTCCACTCTCTCCATCGCCAAACCAACGATCCACCGTCGTCGCTGTCTATGACTA 240
consensus_7989#1      TCACAGTCCACTCTCTCCATCGCCAAACCAACA--CCACCGTCTTCGCT------GATGC 136
consensus_7989#3      GT-TGGATGAGTTTCATGATCG--AAGACGGTG--GTGTTGGTTTGGTGATGG------- 138
                           *   * * **   ****  **  *           *   * *             

consensus_7989#0      ATCAACCAACCACTACTGTGGGCGACGCCGAAAGAGCCTTGGAGACTATTCTCCCAGTCT 292
consensus_7989#2      TGCA-------------------------------------------------------- 244
consensus_7989#1      ATTAATATCGTTTTCTTTTTGATGAT-CTGACTGAGCTTCTAGTAGTTGCATTCTGGTTT 195
consensus_7989#3      ------------------------------------------------------------
                                                                                  

consensus_7989#0      ACCAGCACACTCCAATCCAAAAATACGCTCGCTGGCTTACATCTCTGGAACGACTACACC 352
consensus_7989#2      ------------------------------------------------------------
consensus_7989#1      GAGAAAGATCTGTTTCTAACTGATTTACTTGAGCAGTGAGTTCTTGGACGCGATAGGTTG 255
consensus_7989#3      ------------------------------------------------------------
                                                                                  

consensus_7989#0      CTTCGTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAAC 412
consensus_7989#2      ------------------------------------------------------------
consensus_7989#1      AATTGTA--TGCTGTCTCTNTTTCTCGGGCAACTTCTTCGGACAAC-------------- 299
consensus_7989#3      ------------------------------------------------------------
                                                                                  

consensus_7989#0      TCATCAACCAAC 424
consensus_7989#2      ------------
consensus_7989#1      ------------
consensus_7989#3      ------------