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Schistosoma mansoni
cluster # 7991 cluster # 7991       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7991#0 length = 989 sequences # 2  
consensus_7991#1 length = 605 sequences # 2  
consensus_7991#2 length = 279 sequences # 1  
consensus_7991#3 length = 241 sequences # 1  

consensusID : consensus_7991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 989
fasta sequence
                              [TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT-GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG]

[+] EMBL CD080298             [TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAA                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD074216             [                                                                                                                                                                                                                                                                                                                                                                                     CATCTATGTATCTAC TATTTNGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG]


>consensus_7991#0 TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAA TCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGA TTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTA CTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCT ATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTT AATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTAT TTGTTTATCTAATCATCTATGTATCTACTTATTTGCTTACTTACATTACTTGTATACACT TACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTAT TTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTA AAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAA AGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGC ATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTT TATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGT GTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTT TGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAA AGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAG AAATGAACTATTCAATATACGAAAGTATG



consensusID : consensus_7991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 605
fasta sequence
                              [TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG-GTGATTNTACTGTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC]

[+] EMBL CD153009             [TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG GTGATTNTACTGT                                                                ]
[+] EMBL AI820494             [                                                                                                                                                                                                                                                                                                                                                         AAAATATTCCA  TBTGTTTCTCTTTTTCCCCCTCGGTCTTGATAACTTCAACATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTATGTTTGTCTGTATGAGTTTACAGGTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC]


>consensus_7991#1 TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAG TACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTA CTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTG TGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAA CATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATT GATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTT TGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTT TTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTT ATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGGTGATTNTACTG TTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCT ATGAC



consensusID : consensus_7991#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence
                              [TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA]

[+] EMBL AI764845             [TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA]


>consensus_7991#2 TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTT CGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATG TTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATC GATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATC TATGTATCTACTTATGTGCTTACTTACATTACTTGTATA



consensusID : consensus_7991#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence
                              [GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT]

[+] EMBL SM6801               [GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT]


>consensus_7991#3 GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGT CACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTAC GGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCT CCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGT T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      ------------------------------------------------------------
consensus_7991#1      TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAG 60
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      --------------TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATA 46
consensus_7991#1      TACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTA 120
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      ATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTG 106
consensus_7991#1      CTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTG 180
                                                                                  

consensus_7991#2      -----------------------------TTCGGGC-GCNAAGCAATG--GNTCTCC--- 25
consensus_7991#3      -------------------GNCCCATNGTCAAGTAT-GTTGAGTNGAGATGGTCTCC--- 37
consensus_7991#0      TTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTAT-GTTGAGTTGAGATGGTCTCC--- 162
consensus_7991#1      TGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAA 240
                                                      *    *   *     *    * *     

consensus_7991#2      ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 79
consensus_7991#3      ---TCTCCTCCTCTCTNTTNACTAGT-CACGA-NGCATTTCGGTACTGGGACTAAAAAGA 92
consensus_7991#0      ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 216
consensus_7991#1      CATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATT 300
                         *** *   **  * *  ***  *  * **    *  *    *    * ***   *  

consensus_7991#2      ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 128
consensus_7991#3      ACTACTCTTATGTGAAGTGTTTC-------TNTAC----GGAGGGGAAAATGTCAC-CAA 140
consensus_7991#0      ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 265
consensus_7991#1      GATA-TCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTT 359
                        ** ****   * *  ****         * ***    **    ****** *       

consensus_7991#2      TAGTATAGCGGGTG-TATTACTGCATTTGTACGCTTAATTTCCTTT---ATTCATCGATT 184
consensus_7991#3      TAGNNTATCCACNG-TATTACTGCATTTCTACGCTTAACCTCCTTT---ANACATCGNTT 196
consensus_7991#0      TAGTATATCCAATG-TATTACTGCATTTTTACGCTTAATTTCCTTT---ATTCATCGATT 321
consensus_7991#1      TTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTT 419
                      * *  *  *      * *  ***  **  **   * **  *  * *   *   **   **

consensus_7991#2      TTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATG 244
consensus_7991#3      TCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT--------------- 241
consensus_7991#0      TTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATG 381
consensus_7991#1      TTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGT 479
                      *    **    * *  *  *  * *         * * * **  *               

consensus_7991#2      TATCTACTTATGTGCTTACTTACATTACTTGTATA------------------------- 279
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TATCTACTTATTTGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATC 441
consensus_7991#1      TATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGGTGATTNTACT 539
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGT 501
consensus_7991#1      GTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCC 599
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      GTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACAT 561
consensus_7991#1      TATGAC------------------------------------------------------ 605
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGAT 621
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      ATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGT 681
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTC 741
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      GGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATC 801
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGG 861
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCAT 921
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      ------------------------------------------------------------
consensus_7991#3      ------------------------------------------------------------
consensus_7991#0      TGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACG 981
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#2      --------
consensus_7991#3      --------
consensus_7991#0      AAAGTATG 989
consensus_7991#1      --------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)