These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence [TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT-GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG] [+] EMBL CD080298 [TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAA ] [-] EMBL CD074216 [ CATCTATGTATCTAC TATTTNGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG] consensusID : consensus_7991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG-GTGATTNTACTGTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC] [+] EMBL CD153009 [TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG GTGATTNTACTGT ] [+] EMBL AI820494 [ AAAATATTCCA TBTGTTTCTCTTTTTCCCCCTCGGTCTTGATAACTTCAACATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTATGTTTGTCTGTATGAGTTTACAGGTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC] consensusID : consensus_7991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA] [+] EMBL AI764845 [TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA] consensusID : consensus_7991#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT] [+] EMBL SM6801 [GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 ------------------------------------------------------------ consensus_7991#1 TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAG 60 consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 --------------TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATA 46 consensus_7991#1 TACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTA 120 consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 ATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTG 106 consensus_7991#1 CTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTG 180 consensus_7991#2 -----------------------------TTCGGGC-GCNAAGCAATG--GNTCTCC--- 25 consensus_7991#3 -------------------GNCCCATNGTCAAGTAT-GTTGAGTNGAGATGGTCTCC--- 37 consensus_7991#0 TTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTAT-GTTGAGTTGAGATGGTCTCC--- 162 consensus_7991#1 TGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAA 240 * * * * * * consensus_7991#2 ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 79 consensus_7991#3 ---TCTCCTCCTCTCTNTTNACTAGT-CACGA-NGCATTTCGGTACTGGGACTAAAAAGA 92 consensus_7991#0 ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 216 consensus_7991#1 CATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATT 300 *** * ** * * *** * * ** * * * * *** * consensus_7991#2 ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 128 consensus_7991#3 ACTACTCTTATGTGAAGTGTTTC-------TNTAC----GGAGGGGAAAATGTCAC-CAA 140 consensus_7991#0 ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 265 consensus_7991#1 GATA-TCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTT 359 ** **** * * **** * *** ** ****** * consensus_7991#2 TAGTATAGCGGGTG-TATTACTGCATTTGTACGCTTAATTTCCTTT---ATTCATCGATT 184 consensus_7991#3 TAGNNTATCCACNG-TATTACTGCATTTCTACGCTTAACCTCCTTT---ANACATCGNTT 196 consensus_7991#0 TAGTATATCCAATG-TATTACTGCATTTTTACGCTTAATTTCCTTT---ATTCATCGATT 321 consensus_7991#1 TTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTT 419 * * * * * * *** ** ** * ** * * * * ** ** consensus_7991#2 TTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATG 244 consensus_7991#3 TCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT--------------- 241 consensus_7991#0 TTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATG 381 consensus_7991#1 TTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGT 479 * ** * * * * * * * * * ** * consensus_7991#2 TATCTACTTATGTGCTTACTTACATTACTTGTATA------------------------- 279 consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TATCTACTTATTTGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATC 441 consensus_7991#1 TATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGGTGATTNTACT 539 consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGT 501 consensus_7991#1 GTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCC 599 consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 GTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACAT 561 consensus_7991#1 TATGAC------------------------------------------------------ 605 consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGAT 621 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 ATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGT 681 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTC 741 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 GGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATC 801 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGG 861 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCAT 921 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 ------------------------------------------------------------ consensus_7991#3 ------------------------------------------------------------ consensus_7991#0 TGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACG 981 consensus_7991#1 ------------------------------------------------------------ consensus_7991#2 -------- consensus_7991#3 -------- consensus_7991#0 AAAGTATG 989 consensus_7991#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||