cluster # 7995

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Schistosoma mansoni
cluster # 7995 cluster # 7995 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7995#0 length = 519 sequences # 2

consensus_7995#1 length = 446 sequences # 4

consensusID : consensus_7995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATGCATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATGTTGTAGAATTTGCTAAACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGCATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAATAACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT]

[+] EMBL CD148441             [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATGCATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATGTTGTAGAATTTGCTAAACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGCATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAATAACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT]
[+] EMBL CD148418             [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGCTGAA                                                                                                                                                                                                                                                                                                                           ]




>consensus_7995#0
ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCA
GTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGA
CCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAA
AATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTG
TCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATGCAT
GAAGAATTAAGTCAATTATTGGCACCATGTATACAACATGTTGTAGAATTTGCTAAACGT
ATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGCATTT
TTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAATAACA
CTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT

consensusID : consensus_7995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 446
fasta sequence

                              [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC]

[+] EMBL CD154637             [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATAGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC]
[+] EMBL CD116113             [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC]
[+] EMBL CD115963             [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC]
[+] EMBL CD154570             [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACCACAACAACCACAAATATGACTACTGGTCGCTATGGTGTATGTAGTAGACCACCGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCCTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAA                                                                                                                                                 ]




>consensus_7995#1
TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCG
GCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGT
AGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTAT
CAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACT
TTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGA
AAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGT
CTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGT
GGTTCTGACTGTGGAAGAGATGGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7995#0      ---ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCG 57
consensus_7995#1      TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCG 60
                         *********************************************************

consensus_7995#0      GCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGT 117
consensus_7995#1      GCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGT 120
                      ********************************************************* **

consensus_7995#0      AGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTAT 177
consensus_7995#1      AGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTAT 180
                      ************************************************************

consensus_7995#0      CAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACT 237
consensus_7995#1      CAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACT 240
                      ************************************************************

consensus_7995#0      TTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATG 297
consensus_7995#1      TT---GGGTTT----------CTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATG 287
                      **   *  * *           *** * *  *  *     *     ** ** **   ***

consensus_7995#0      CATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATG-TTGTAGAATTTGCTAA 356
consensus_7995#1      TTTAAGAGATGGAA--AATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGT 345
                        * *   **  *   ***   * * *  * ** ** * * *  * ** *    *  *  

consensus_7995#0      ACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGC 416
consensus_7995#1      -CGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAA--AGATAGTGTACGATATGGTCGA 402
                       *** * * * *** *  * *   ****    ** *  *  * ** *    **  *  * 

consensus_7995#0      ATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAAT 476
consensus_7995#1      ATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC---------------- 446
                      **     ** * *    * ****   *          *   *                  

consensus_7995#0      AACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT 519
consensus_7995#1      -------------------------------------------