These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATGCATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATGTTGTAGAATTTGCTAAACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGCATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAATAACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT] [+] EMBL CD148441 [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATGCATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATGTTGTAGAATTTGCTAAACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGCATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAATAACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT] [+] EMBL CD148418 [ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGCTGAA ] consensusID : consensus_7995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 446 fasta sequence [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC] [+] EMBL CD154637 [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATAGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC] [+] EMBL CD116113 [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC] [+] EMBL CD115963 [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGTAGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAAAATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGTCGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAAAGATAGTGTACGATATGGTCGAATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC] [+] EMBL CD154570 [TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCGGCAGTGGCAACGACCACAACAACCACAAATATGACTACTGGTCGCTATGGTGTATGTAGTAGACCACCGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTATCAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACTTTGGGTTTCCTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATGTTTAAGAGATGGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7995#0 ---ATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCG 57 consensus_7995#1 TTTATTCCACCACCTTCATGTACATCAGAATTATCGGGTAATTCAGCAGTAGTGGGAGCG 60 ********************************************************* consensus_7995#0 GCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTGGT 117 consensus_7995#1 GCAGTGGCAACGACAACAACAACCACAAATATGACTACTGGTCGTTATGGTGTATGTAGT 120 ********************************************************* ** consensus_7995#0 AGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTAT 177 consensus_7995#1 AGACCAGGGAATGATCATCTTGGTTTATATGAAACTATACTAACTATAAGTCAAGCTTAT 180 ************************************************************ consensus_7995#0 CAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACT 237 consensus_7995#1 CAAAATTTCTCTCCATATACTGATGAAAAGATTAAAGTTATGCGATGCAGACCAATCACT 240 ************************************************************ consensus_7995#0 TTGTCGAATGTGACACGTGAATTTTGGCCTGAAAAAGTGGATGAGCATCGATTACGTATG 297 consensus_7995#1 TT---GGGTTT----------CTTTCGTCGAAGTATTCAAAAACAAATTGAATATAAATG 287 ** * * * *** * * * * * ** ** ** *** consensus_7995#0 CATGAAGAATTAAGTCAATTATTGGCACCATGTATACAACATG-TTGTAGAATTTGCTAA 356 consensus_7995#1 TTTAAGAGATGGAA--AATGTCTTGTAATACGTTTAAATCGTAATCGTTGTCAATATTGT 345 * * ** * *** * * * * ** ** * * * * ** * * * consensus_7995#0 ACGTATCCCTGAATTTAGTTCACTTGGTCAACCAGATCAATTGGTATTAATTAAAGCAGC 416 consensus_7995#1 -CGTTTTCGTAAATGTCTTGCTGCTGGTATGTCAAA--AGATAGTGTACGATATGGTCGA 402 *** * * * *** * * * **** ** * * * ** * ** * * consensus_7995#0 ATTTTTTGAAGTATGGCTTGTTCAAGCATCACGTTTAAATATCAACAATGATCGTAAAAT 476 consensus_7995#1 ATGCCAAGACGAACACGTGGTTCTGACTGTGGAAGAGATGGTTC---------------- 446 ** ** * * * **** * * * consensus_7995#0 AACACTAGCTGATGGGAAACAAATTACTAAACAAGAATTAGAT 519 consensus_7995#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||