These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence [TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAGCTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAGGGTGCTTGTCGAAGAGAATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG-AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTTAAAGAAGTTAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACTGCAAATGCAGTTGGAACAACC] [-] EMBL CD166797 [TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAGCTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAGGGTGCTTGTCGAAGAGAATAAAAAGCTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAGAAAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGCCTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGAC ATGTG ] [+] EMBL CD121038 [ ATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAGACAAAGCAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTTAAAGAAGTT ] [+] EMBL CD120990 [ ATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGGATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACACTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTTAATCCGANNATCGTATTGC ] [+] EMBL CD150027 [ CAATCGAAGTCTTGTCAATCAGAATAGGGATGAG AAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGACCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAGCGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATT ] [+] EMBL CD136731 [ GTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGGAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTAAAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCAAATCCGAACAGGCTAAATCCG AAATCGTATTGCGGAACTTAAAGAAGTAAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACTGCAAATGCAGTTGGAACAACC] consensusID : consensus_8000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [AAAAAAGACATCCAGCACACCAAGTAAAGCAGCAGAGGTGTCTGAGCCACAAAGCAGTACATCAGGCAAAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAATTAGCCCGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGCTAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGAGCTCGAAGTAATACCTGTAGATAGAGTTGATGACGCCAATAAAGAAATGCAACCCACCAAGACCTTGTTCGTAGGTGGAATCCCAAAAACTTTGACAATCGAACAACTAAAAAGTCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT] [+] EMBL CD148659 [AAAAAAGACATCCAGCACACCAAGTAAAGCAGCAGAGGTGTCTGAGCCACAAAGCAGTACATCAGGCAAAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAATTAGCCCGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGCTAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGAGCTCGAAGTAATACCTGTAGATAGAGTTGATGACGCCAATAAAGAAATGCAACCCACCAAGACCTTGTTCGTAGGTGGAATCCCAAAAACTTTGACAATCGAACAACTAAAAAGTCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8000#0 TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAG 60 consensus_8000#1 ------------------------------------------------------------ consensus_8000#0 CTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAG 120 consensus_8000#1 ------------------------------------------------------------ consensus_8000#0 GGTGCTTGTCGAAGAGAATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAA 180 consensus_8000#1 ------------------------------------------------------------ consensus_8000#0 TCGAAGTCTTGTCAATCAGAATAGGGATGAGAAAAAAAAGGTTATGGATTGCCGTTTGCA 240 consensus_8000#1 --------------------------------------------------AAAAAAGACA 10 ** consensus_8000#0 GATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGA-ATTAGCCG 299 consensus_8000#1 TCCAGCACACCAAGTAAAGCAGCA-GAGGTGTCTGA-GCCACAAAGCAGTACATCAGGCA 68 ** ** ** * ** * *** ** ** ************ * ** ** * consensus_8000#0 ATTCACAAGGACAATGTGAACGCG----TACGTATGACATTAGAAAGTTGTGAAGCTAAA 355 consensus_8000#1 AAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAA 128 * * ** * ** * * * ** * * * * * ** * *** consensus_8000#0 TTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTT----TAATAAAGATCAAGGA 411 consensus_8000#1 TTAGCC--CGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGC 186 ***** * *** ** * * * ** * **** **** * ** * consensus_8000#0 TAGCATTATTGTAAAACAAAGTAATTTCACGA-AGGAAATTGAAGAACGCTTGAGAAATA 470 consensus_8000#1 TAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGA 246 ** ** * ** ***** ** * * ****** * * * * *** * consensus_8000#0 TCACGGAGGAACGAG-ATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAAT 529 consensus_8000#1 GCTCGAAGTAATACCTGTAGATAG--AGTTGATGACGCCAATAAAGAAATGCAACCCACC 304 * ** ** ** ** * * * * * * * *** *** * * ** * consensus_8000#0 ATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAG 589 consensus_8000#1 AAGACCTTGTTCGTAGGTGGA-ATCCCAAAAACTTTGACAATCGA---ACAACTAAAAAG 360 * * * * ***** * ** * * **** * * *** * * * ** consensus_8000#0 GAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCT 649 consensus_8000#1 TCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT------------------ 402 ** * * ** * * * * *** ** consensus_8000#0 GCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTT 709 consensus_8000#1 ------------------------------------------------------------ consensus_8000#0 AAAGAAGTTAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACT 769 consensus_8000#1 ------------------------------------------------------------ consensus_8000#0 GCAAATGCAGTTGGAACAACC 790 consensus_8000#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||