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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2068 fasta sequence
[ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCTAACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATTAATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCTCCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCACCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCAGGAGGCAACACATTAAGCAGAGCAAGCTCACCTAACTCCATTGGTCCTGGCCTATCTGATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGCTCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCTTGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATGTCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTGTCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTAATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTAACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAACTTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGACTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC-ATCACCA-GATCATAAAGATATTTCTTGTTC-TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG-TTTTTTTTCTAGAAATTATTTTCGCTTGATG-ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTCCTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTCCAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTCATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTATTATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTTTGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATCTTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATACATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTATCTTAATATACACTATGTTGTATTGAAAAAAA]
[+] EMBL SMSERRICH [ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCTAACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATTAATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCTCCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCACCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCAGGAGGCAACACATTAAGCAGAGCAAGCTCACCTAACTCCATTGGTCCTGGCCTATCTGATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGCTCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCTTGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATGTCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTGTCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTAATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTAACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAACTTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGACTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTCAATCACCAGGATCATAAAGATATTTCTTGTTCTTGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCT AAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTATTGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTCCTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTCCAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTCATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTATTATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTTTGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATCTTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATACATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTATCTTAATATACACTATGTTGTATTGAAAAAAA]
[+] EMBL CD140476 [ TCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATCAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCA ]
[+] EMBL CD140448 [ TCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATGAATAGTTTTCATTCTGATTGTATACAGTTGTCTAATTTGTTGTTTCCTT ]
[+] EMBL CD196451 [ CTAT ATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAGGAAAATAGCTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGACATGTA ]
[-] EMBL CD196357 [ atATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTTGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGTGAATATTCATGTAGGTGTA TATATTTG ATATTT ACTT ]
consensusID : consensus_8002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence
[TCAGCCGGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTTGATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGGGTG]
[-] EMBL CD073315 [TCAGCCGGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTTGATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8002#0 ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCT 60
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 AACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATT 120
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 AATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCT 180
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCA 240
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCA 300
consensus_8002#1 ------------------------------------------------------TCAGCC 6
****
consensus_8002#0 GGAGGCAACACATTAAGCAGAGCAAGCTCACC---TAACTCCATTGGTCCTGGCCTATCT 357
consensus_8002#1 GGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTT 66
****** ** ******************* ** **************** ***** *
consensus_8002#0 GATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGAT 417
consensus_8002#1 GATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGAT 126
************ ********* * ***********************************
consensus_8002#0 GAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGC 477
consensus_8002#1 GAGGGTG----------------------------------------------------- 133
*** ***
consensus_8002#0 TCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCT 537
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATG 597
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTG 657
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTA 717
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTA 777
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAAC 837
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGA 897
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAAT 957
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 AAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCT 1017
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 GATGATGAACCAAAAATACATTCATCACCAGATCATAAAGATATTTCTTGTTCTGTATCC 1077
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGAT 1137
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 AGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTC 1197
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TAGAAATTATTTTCGCTTGATGATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTG 1257
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGA 1317
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 GAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTA 1377
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAA 1437
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACT 1497
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAA 1557
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTC 1617
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTC 1677
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTC 1737
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTAT 1797
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTT 1857
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATC 1917
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 TTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATAC 1977
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 ATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTAT 2037
consensus_8002#1 ------------------------------------------------------------
consensus_8002#0 CTTAATATACACTATGTTGTATTGAAAAAAA 2068
consensus_8002#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||