These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2068 fasta sequence [ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCTAACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATTAATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCTCCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCACCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCAGGAGGCAACACATTAAGCAGAGCAAGCTCACCTAACTCCATTGGTCCTGGCCTATCTGATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGCTCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCTTGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATGTCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTGTCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTAATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTAACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAACTTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGACTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC-ATCACCA-GATCATAAAGATATTTCTTGTTC-TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG-TTTTTTTTCTAGAAATTATTTTCGCTTGATG-ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTCCTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTCCAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTCATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTATTATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTTTGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATCTTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATACATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTATCTTAATATACACTATGTTGTATTGAAAAAAA] [+] EMBL SMSERRICH [ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCTAACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATTAATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCTCCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCACCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCAGGAGGCAACACATTAAGCAGAGCAAGCTCACCTAACTCCATTGGTCCTGGCCTATCTGATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGCTCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCTTGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATGTCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTGTCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTAATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTAACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAACTTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGACTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTCAATCACCAGGATCATAAAGATATTTCTTGTTCTTGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCT AAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTATTGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTCCTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTCCAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTCATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTATTATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTTTGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATCTTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATACATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTATCTTAATATACACTATGTTGTATTGAAAAAAA] [+] EMBL CD140476 [ TCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATCAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCA ] [+] EMBL CD140448 [ TCTATAATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTG TTTTTTTTCTAGAAATTATTTTCGCTTGATGAATAGTTTTCATTCTGATTGTATACAGTTGTCTAATTTGTTGTTTCCTT ] [+] EMBL CD196451 [ CTAT ATGGCAAATGAAAAAGTTATTTACAATAAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCTGATGATGAACCAAAAATACATTC ATCACCA GATCATAAAGATATTTCTTGTTC TGTATCCATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGATAGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAGGAAAATAGCTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGACATGTA ] [-] EMBL CD196357 [ atATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTTCTAGAAATTATTTTCGCTTGATG ATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTGTTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGAGAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTATTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAATAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACTTTTTATTTATTCGATATTTACCATGTTGTAAATGTACATATATTATCAAAATTAAAAAAAACCAAATATGTGAATATTCATGTAGGTGTA TATATTTG ATATTT ACTT ] consensusID : consensus_8002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TCAGCCGGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTTGATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGGGTG] [-] EMBL CD073315 [TCAGCCGGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTTGATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGATGAGGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8002#0 ACGAGCTTTTCGGAAAGTCCTGCGCCTTCTAACTGCTCATCTCACCAAGGTTTCGGACCT 60 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 AACCCGAGTAATTTAGCCGATGATATATCGTCAACAGACTCACTGATCAATGTGCCTATT 120 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 AATCCACAACCACACCATCTTTCGGAGTATGAGTTTAACGATCCAACTGATATTAAGCCT 180 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CCTAAAATTTCCGAATATCCATCAAAGCCTAGCTTTGGTGTGACAAGGTCTGCTCCATCA 240 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CCAGTTGAGGAGCCTATGCGCCCTTGTAGGTCGGTACTCACCCTGCATCTAGTTCCAGCA 300 consensus_8002#1 ------------------------------------------------------TCAGCC 6 **** consensus_8002#0 GGAGGCAACACATTAAGCAGAGCAAGCTCACC---TAACTCCATTGGTCCTGGCCTATCT 357 consensus_8002#1 GGAGGCTACCCATTAAGCAGAGCAAGCTCCCCCCCTAACTCCATTGGTCCTTCCCTATTT 66 ****** ** ******************* ** **************** ***** * consensus_8002#0 GATGTCAAAAAAGAGCAAGCTGCTCTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGAT 417 consensus_8002#1 GATGTCAAAAAAAAGCAAGCTGTTTTTGAAGCTGAGCAAGCTGCTCATGATGGTGATGAT 126 ************ ********* * *********************************** consensus_8002#0 GAGTGTGAAGAAGAAGAAAATATTCATAAAGCTAGCTTATCTACAGAACCAAAGCTCTGC 477 consensus_8002#1 GAGGGTG----------------------------------------------------- 133 *** *** consensus_8002#0 TCTCGTGGGACCAAACAATCCAGGCGCTCCGTTTTACGAACTGTTTCGGGGAATTCATCT 537 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TGTTCATCTCAGAATCGCCGAAGTCATCGGGAAGAGAGATTACGCTGTACTTCCTCTATG 597 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TCACCTTTAAAGCGAAAGAAATTGACTACTGGTTCTAGTCGCAGTAATTGCATAGGTTTG 657 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TCCTCTCTTCCACGTGGTTGTCAGTCAAAAGGTAGAATATCGAAGGAATCAAATTCTTTA 717 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ATGTCTCCTACTAGTTACCGTTCCTTACGCAGTAGCAGAGACCAGTATGTCGCTAACGTA 777 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ACAAAATCCAAAAAATCATCAAAACGATTCAAAAAGTTCTCTAGTCAGTTAGATGGAAAC 837 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TTAAAACCACAAAAACGTCAACGCTTTGAAGAATTACCGAAATCTAATTGTAAACAGCGA 897 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CTGCAAAATGGACAAGAGTATGAAAAATCTATAATGGCAAATGAAAAAGTTATTTACAAT 957 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 AAAAGTTCTTTTTCCAGTAATATCAATTGTAACATCTCTACTAATCATTACACTTTTCCT 1017 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 GATGATGAACCAAAAATACATTCATCACCAGATCATAAAGATATTTCTTGTTCTGTATCC 1077 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ATATCCCAAACACATCCACGTTTATCAACAGAATCTAAAAACACTAGTGCAATGACAGAT 1137 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 AGCAGTGGAGCTACTGCCTTAGAAATGTCTAGCTAACTAATTCCTCTTCTGTTTTTTTTC 1197 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TAGAAATTATTTTCGCTTGATGATAGTTTTTATTCTGATTGTATAAAGTTGTCTAATTTG 1257 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TTGTTTCCTTTACTATCGTTTGTTTTTTAAAGAAAATAACTAATCATTATATTTCATTGA 1317 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 GAAATTTTACTTAAAATGAAGCAGTAAATAAAGTCTAATGTCTACTGTGTATGAAATGTA 1377 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TTTAATTCAAACCCTGTCATACCTTGTTGTTGTGTGTATCAAGTTAGAAATATCTATCAA 1437 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TAAAGGGAGTCACTCTTTAGTGCCTTTAATACTTTATACACGTACTGTAACATTTACACT 1497 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TTTTATTTATTCGATATTTACCATGTNGTAAATGTACATATATTATCAAAATTAAAAAAA 1557 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ACCAAATATGGGAATATTCATGTAGGTGTATTATATTTGTATATTTAACTTCTAACTTTC 1617 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CTCTTNGTTTNNGTTCACATTTTCACGAAGGCAATGTGCTGTGCACATATTTATGGTNTC 1677 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CAATTAAAATATTTATTGTGTAGCTACCAATTAGNATGTTAAAAGTTCCTTGTTAACTTC 1737 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ATTTTACCAGGGTTTTTTTTTTCCNAAGTTTNTATTACTTTTTACCATTATTATTATTAT 1797 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TATTATTCATTATTGTTATTATTATTATTCGGAACACACTTGATTCTGTTTATCATATTT 1857 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TGTTATTTTAATATAATGAAAAATTATTTTATGTAGTTTGATTGATCTCAACTAATAATC 1917 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 TTCTTTGTTCTTTTCCTACTGTCGTTTATTGTTTTTGTTTTCTTCACTTTTCCCATATAC 1977 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 ATACATATTTGTAAAGTTTTTATACATAAATGTATAGTTCTAATGTTATTGCAATGCTAT 2037 consensus_8002#1 ------------------------------------------------------------ consensus_8002#0 CTTAATATACACTATGTTGTATTGAAAAAAA 2068 consensus_8002#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||