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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1163 fasta sequence
[CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAGAAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTATGCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTTAATTCTACCACANAGTTTACGTTATGTATCATTCAAACTGAAACATTTGTTATTCACACTGATCTAATGAACGTGATTCATCTGATGCTCTAACTTATTCCCAAAATCGTTACTAACTGCATGATACATTCTATTCTTGAATTTATACAT]
[+] EMBL CD081778 [CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAGAAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTATGCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTC ]
[+] EMBL CD170178 [ ggcggctAATGATAAAAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATC ]
[+] EMBL CD080070 [ ATGGTGTATGATT ACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTTAATTCTACCACANAGTTTACGTTATGTATCATTCAAACTGAAACATTTGTTATTCACACTGATCTAATGAACGTGATTCATCTGATGCTCTAACTTATTCCCAAAATCGTTACTAACTGCATGATACATTCTATTCTTGAATTTATACAT]
consensusID : consensus_8004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence
[GTTATCGTAGTTGCCCATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTAATGTTGATCTAACTAAAAGTAGCCCAAGATTGAATCTATGAAGGCTATGTGGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC-AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTACTTCCTTTTTAATATTATCTT]
[+] EMBL CD082434 [GTTATCGTAGTTGCCCATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTAATGTTGATCTAACTAAAAGTAGCCCAAGATTGAATCTATGAAGGCTATGTGGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTNTGTAATTNTATAAACATTTGTACTTCCTTTNT ATATTATCT ]
[-] EMBL CD076033 [ GGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAGACATTTGTACTTCCTTATAAATATTATCTT]
[-] EMBL CD075944 [ ATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCNAACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTACTTCCTTTTTAATATTATCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8004#0 CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAG 60
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 AAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTAT 120
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 GCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTT 180
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 AAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGG 240
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 TGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACA 300
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 CGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACC 360
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 AATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGG 420
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 TACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAAT 480
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 TCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCA 540
consensus_8004#1 ---GTTATCGTAGTTGCCC---ATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTA 54
* * * * * * **** * ** ** *** ** * ** * *
consensus_8004#0 AGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATC 600
consensus_8004#1 ATGTT-GATCTA------ACTAAAAG--TAGCCCAAGATT---GAATCTATGAAGGC--- 99
* * ****** * **** ** ** ** ** * * * * *
consensus_8004#0 AATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGA 660
consensus_8004#1 --TATGTGGTAGCTT--ACTTACTTACGCCTGTTACTCCCAATGGAGC-------TTAGG 148
* *** * * * * * * ** * * * **** *** ****
consensus_8004#0 TATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACG 720
consensus_8004#1 AACTATAAAAT----ATTTATAACCGTTATCAACAGCTTAT--GATGAAATATTTGAATA 202
* * * ** *** * ***** * * * **** ** * *
consensus_8004#0 AAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAAC 780
consensus_8004#1 ATATTCA-----------ACATAATT--------TTTTTTTATTTG---TCTTCCCAGAC 240
* *** * * ***** ** ** ** *** * * * ** **
consensus_8004#0 ATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCA 840
consensus_8004#1 ATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCA 300
*** ********************************************************
consensus_8004#0 ACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTCTGATAC 900
consensus_8004#1 ACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATAC 360
**************** ****************************** ***********
consensus_8004#0 TTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTA 960
consensus_8004#1 TTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTA 420
*********************************** ************************
consensus_8004#0 GTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTT-AATTC- 1018
consensus_8004#1 GTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCA 480
******************************** ******************** *****
consensus_8004#0 TAC-CACANAGTTT-ACGTTAT-GTATCA-TTCAAACTGAAAC--ATTTGT-TATTCACA 1071
consensus_8004#1 TACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACA 540
*** **** ***** ******* ****** * ********** ****** ********
consensus_8004#0 C-TGATCTAA-TGAAC--GTGATTCA-TCTGAT-GCTCTAA--CTTATTCCC--AAAATC 1121
consensus_8004#1 CATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATC 600
* ******** **** ******** ****** ******* ***** * *****
consensus_8004#0 GTT---ACTAACT-GCAT-GATA-CATT-----CTATTCTTGAATTTATACAT------- 1163
consensus_8004#1 GTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTA 660
*** * **** **** **** **** ** ** * * ****** *
consensus_8004#0 ---------------------
consensus_8004#1 CTTCCTTTTTAATATTATCTT 681
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||