These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1163 fasta sequence [CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAGAAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTATGCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTTAATTCTACCACANAGTTTACGTTATGTATCATTCAAACTGAAACATTTGTTATTCACACTGATCTAATGAACGTGATTCATCTGATGCTCTAACTTATTCCCAAAATCGTTACTAACTGCATGATACATTCTATTCTTGAATTTATACAT] [+] EMBL CD081778 [CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAGAAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTATGCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTC ] [+] EMBL CD170178 [ ggcggctAATGATAAAAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTTAAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGGTGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATC ] [+] EMBL CD080070 [ ATGGTGTATGATT ACACGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACCAATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGGTACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAATTCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCAAGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATCAATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGATATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACGAAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCAACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTTAATTCTACCACANAGTTTACGTTATGTATCATTCAAACTGAAACATTTGTTATTCACACTGATCTAATGAACGTGATTCATCTGATGCTCTAACTTATTCCCAAAATCGTTACTAACTGCATGATACATTCTATTCTTGAATTTATACAT] consensusID : consensus_8004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [GTTATCGTAGTTGCCCATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTAATGTTGATCTAACTAAAAGTAGCCCAAGATTGAATCTATGAAGGCTATGTGGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC-AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTACTTCCTTTTTAATATTATCTT] [+] EMBL CD082434 [GTTATCGTAGTTGCCCATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTAATGTTGATCTAACTAAAAGTAGCCCAAGATTGAATCTATGAAGGCTATGTGGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTNTGTAATTNTATAAACATTTGTACTTCCTTTNT ATATTATCT ] [-] EMBL CD076033 [ GGTAGCTTACTTACTTACGCCTGTTACTCCCAATGGAGCTTAGGAACTATAAAATATTTATAACCGTTATCAACAGCTTATGATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCC AACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAGACATTTGTACTTCCTTATAAATATTATCTT] [-] EMBL CD075944 [ ATGAAATATTTGAATAATATTCAACATAATTTTTTTTTATTTGTCTTCCCAGACATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCNAACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATACTTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTAGTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCATACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACACATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATCGTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTACTTCCTTTTTAATATTATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8004#0 CGAGGCCATTAATTCGGCACGAGGATTTAAAACAAATTCATGGATGGATGACAAGACTAG 60 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 AAAGGACGTGAATGAACGAATTAACAAAATGAAAATTTTATTCAAAGTTCCAGAAATTAT 120 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 GCGCAATGATAAGAAATTAAATTATGCATATCGAACGCTAAAAACTTCATATAATTACTT 180 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 AAACAATCTATTCTCAGCTGTTCAATATATTCGTGGAGTGTATAATCGTCTACTTTCTGG 240 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 TGTTACGGAAACAAGTGAAGAAAATTGGAGTTCACGAGATGTTATGGTGTATGATTCACA 300 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 CGTAGCTTTACATTTACTGTTAGATGAAGTATTTATTCCACCTGGAATGCTTCAGTTACC 360 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 AATATTTCATCATAATTTACCAGCTGCTTTTAATTTTGGTGGTTTAGGATCTTTGATCGG 420 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 TACTGCTATTGGTATATTAGTTGGGGAATATGGATCATTTATGCTAAAAGAAGGTGAAAT 480 consensus_8004#1 ------------------------------------------------------------ consensus_8004#0 TCAATCAATTTGGACATCTGAAACTGTTAATAAGTATCAAGAAGAAAAGAAATGTGTTCA 540 consensus_8004#1 ---GTTATCGTAGTTGCCC---ATTGTTGAGGGGTCCCATACTAAAACGAGAGCTGCTTA 54 * * * * * * **** * ** ** *** ** * ** * * consensus_8004#0 AGATCAGATCTACGATGCATCAAAAAATTATTTTAATTTTTCCGACATTGTTATGTCATC 600 consensus_8004#1 ATGTT-GATCTA------ACTAAAAG--TAGCCCAAGATT---GAATCTATGAAGGC--- 99 * * ****** * **** ** ** ** ** * * * * * consensus_8004#0 AATGAGTGATGACATCAAGAAAATCACACGTTCAGTTATTAATGAAGCATCTGGATTAGA 660 consensus_8004#1 --TATGTGGTAGCTT--ACTTACTTACGCCTGTTACTCCCAATGGAGC-------TTAGG 148 * *** * * * * * * ** * * * **** *** **** consensus_8004#0 TATTGCTAGATCTGCATTCGAAGATTGGATCAATGATTCACCGGGCGAAAAATATTTACG 720 consensus_8004#1 AACTATAAAAT----ATTTATAACCGTTATCAACAGCTTAT--GATGAAATATTTGAATA 202 * * * ** *** * ***** * * * **** ** * * consensus_8004#0 AAATTTACCTGGAGTTACATTTAATTCCAAACAATTATTCTACTTGATATATGCACAAAC 780 consensus_8004#1 ATATTCA-----------ACATAATT--------TTTTTTTATTTG---TCTTCCCAGAC 240 * *** * * ***** ** ** ** *** * * * ** ** consensus_8004#0 ATTNTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCA 840 consensus_8004#1 ATTTTGTCATGATATGGATTTATGGGATGAATATTATCAAATGATTATAAGAACACCCCA 300 *** ******************************************************** consensus_8004#0 ACCACCTTATGAAGTTNTAGTCAATCATATAATGAATGAGCTACCGGGATTCTCTGATAC 900 consensus_8004#1 ACCACCTTATGAAGTTTTAGTCAATCATATAATGAATGAGCTACCGGATTTCTCTGATAC 360 **************** ****************************** *********** consensus_8004#0 TTTCAATTGTCCAGTTGGAACACCGATGAATCCTANAAAGCGTTGCCGTGCAGCACTTTA 960 consensus_8004#1 TTTCAATTGTCCAGTTGGAACACCGATGAATCCTAAAAAGCGTTGCCGTGCAGCACTTTA 420 *********************************** ************************ consensus_8004#0 GTGGCATTTATCGATGAATCTATTTTCACATANAACAATTATTGTTTTATTTT-AATTC- 1018 consensus_8004#1 GTGGCATTTATCGATGAATCTATTTTCACATAAAACAATTATTGTTTTATTTTTAATTCA 480 ******************************** ******************** ***** consensus_8004#0 TAC-CACANAGTTT-ACGTTAT-GTATCA-TTCAAACTGAAAC--ATTTGT-TATTCACA 1071 consensus_8004#1 TACACACAAAGTTTTACGTTATAGTATCAATCCAAACTGAAAACAATTTGTATATTCACA 540 *** **** ***** ******* ****** * ********** ****** ******** consensus_8004#0 C-TGATCTAA-TGAAC--GTGATTCA-TCTGAT-GCTCTAA--CTTATTCCC--AAAATC 1121 consensus_8004#1 CATGATCTAAATGAAACGGTGATTCAATCTGATTGCTCTAAGCTCTATTCACCAGAAATC 600 * ******** **** ******** ****** ******* ***** * ***** consensus_8004#0 GTT---ACTAACT-GCAT-GATA-CATT-----CTATTCTTGAATTTATACAT------- 1163 consensus_8004#1 GTTTACATAAACTTGCATTGATAACATTTCTATCTCTTTGTAATTTTATAAACATTTGTA 660 *** * **** **** **** **** ** ** * * ****** * consensus_8004#0 --------------------- consensus_8004#1 CTTCCTTTTTAATATTATCTT 681 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||