cluster # 8009

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Schistosoma mansoni
cluster # 8009 cluster # 8009 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8009#0 length = 998 sequences # 3

consensus_8009#1 length = 580 sequences # 2
consensus_8009#2 length = 270 sequences # 1

consensusID : consensus_8009#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 998
fasta sequence

                              [AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG-CGGTTTCTTAGCAGGAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGTAAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGTTTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTAGGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTTCAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA]

[+] EMBL CD081328             [AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTCTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTCTTTGCTGTTCTCACTGCCGTCTATTTTCTATAAATGTAACCAGCCGGTTTCCTAGCccg                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD075160             [                                                                           TTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGNAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG CGGTTTCTTAGCAG                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD119900             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG CGGTTTCTTAGCAGAAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGTAAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGTTTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTAGGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTTCAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA]




>consensus_8009#0
AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCAC
TTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATA
GTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGT
TGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTG
ACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAA
TGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAA
CAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGT
CTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGC
AAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGC
CAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGA
TTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTT
TTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAGCGGTTTCTTAGCAGGAG
GAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGTAAG
CATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGTTTA
GTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTAGGT
TAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTTCAG
GCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA

consensusID : consensus_8009#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence

                              [CAGNGCCANAATTTGGCACGAGGGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC]

[+] EMBL CD079633             [CAGNGCCANAATTTGGCACGAGGGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC]
[+] EMBL SMAA18483            [                        CCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCNACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTC                                         ]




>consensus_8009#1
CAGNGCCANAATTTGGCACGAGGGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTT
GAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGT
GCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTG
GATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGAC
TCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATG
ATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACA
GACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCT
CTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAA
ACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCA
GTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC

consensusID : consensus_8009#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [TCGGCACGAGGTGCAAGGTCAAGTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATANCGAATCAGCAAGAAGAACTTT]

[+] EMBL CD077680             [TCGGCACGAGGTGCAAGGTCAAGTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATANCGAATCAGCAAGAAGAACTTT]




>consensus_8009#2
TCGGCACGAGGTGCAAGGTCAAGTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCAC
TTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATA
GTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGT
TGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTG
ACTCAATANCGAATCAGCAAGAAGAACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8009#0      ---AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGT 57
consensus_8009#1      CAGNGCCANAATT--TGGCACGAGG---GCCGTTCAAGCATGTGTGAATGGAGTTGATGT 55
consensus_8009#2      --TCGGCACGAGGTGCAAGGTCAAG-TTGCCGTTCAAGCATGTGTGAATGGAGTTGATGT 57
                          * **  *           * *   ********************************

consensus_8009#0      CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 117
consensus_8009#1      CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 115
consensus_8009#2      CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 117
                      ************************************************************

consensus_8009#0      ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 177
consensus_8009#1      ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 175
consensus_8009#2      ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 177
                      ************************************************************

consensus_8009#0      TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 237
consensus_8009#1      TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 235
consensus_8009#2      TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 237
                      ************************************************************

consensus_8009#0      TTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGA 297
consensus_8009#1      TTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGA 295
consensus_8009#2      TTGACTCAATANCGAATCAGCAAGAAGAACTTT--------------------------- 270
                      ***********   ******************                            

consensus_8009#0      AAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGT 357
consensus_8009#1      AAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGT 355
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      TAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGG 417
consensus_8009#1      TAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGG 415
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      AGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATC 477
consensus_8009#1      AGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATC 475
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      CGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGT 537
consensus_8009#1      CGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGT 535
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      TGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTAT 597
consensus_8009#1      TGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC--------------- 580
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      TGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAG 657
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      TTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAGCGGTTTCTTAGCAG 717
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      GAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGT 777
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      AAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGT 837
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      TTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTA 897
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      GGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTT 957
consensus_8009#1      ------------------------------------------------------------
consensus_8009#2      ------------------------------------------------------------
                                                                                  

consensus_8009#0      CAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA 998
consensus_8009#1      -----------------------------------------
consensus_8009#2      -----------------------------------------