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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1035 fasta sequence
[AAATAATATATATGGATATAGGTATATA-TTA-TTGTCCATAGATTC-TTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTAAA---TGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGTAAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC-TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTCTCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAAGACCACCAGTTTCAG]
[-] EMBL AI618804 [AAATAATATATATGGATATAGGTATATA TTA TTGTCCATAGATTC TTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTAAAACGTGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAA ]
[+] EMBL CD073322 [ TATGTATATATTTATTTGTTCATAGATTCTTTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTATA TGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGTAAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATT ]
[+] EMBL CD125093 [ AATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCCTTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAAATAGTCATATTGTTATTCATCAT ]
[-] EMBL CD078862 [ nTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTCTCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAAGACCACCAGTTTCAG]
[+] EMBL CD147089 [ CCATAACAAATCCATTAATAGCCGCATCTAATAGTCCTTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCAT ]
consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[ATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTCCTCGTGCCGATTCTGCCTCGAGGCCAATTC]
[-] EMBL CD077400 [ATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTCCTCGTGCCGATTCTGCCTCGAGGCCAATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8011#0 AAATAATATATATGGATATAGGTATATATTATTGTCCATAGATTCTTAATACAAATTCGA 60
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTA 120
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGC 180
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 TGATCCTTTGTAAATGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATT 240
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGA 300
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 TAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGT 360
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGA 420
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAAT 480
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 AGTCCTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGG 540
consensus_8011#1 ---------------------------------------------------ATACACCGG 9
*********
consensus_8011#0 TACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACG 600
consensus_8011#1 TACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACG 69
************************************************************
consensus_8011#0 AATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTG 660
consensus_8011#1 AATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTG 129
************************ ***********************************
consensus_8011#0 ATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTAC 720
consensus_8011#1 ATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTAC 189
************************************************************
consensus_8011#0 AATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTG 780
consensus_8011#1 AATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTG 249
************************************************************
consensus_8011#0 TCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTC 840
consensus_8011#1 TCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTC 309
************************************************************
consensus_8011#0 CAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGAC 900
consensus_8011#1 CAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGAC 369
************************************************************
consensus_8011#0 TTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTC 960
consensus_8011#1 TTTCCTGAGTCCT---CGTGCCGATT--CTGCCTCGAGGCCAATTC-------------- 410
********** * * * * * * * * * *** *
consensus_8011#0 TCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAA 1020
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GACCACCAGTTTCAG 1035
consensus_8011#1 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||