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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1274 fasta sequence
[TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACAC-TTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC]
[-] EMBL CD129808 [TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACACTTTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATT ]
[+] EMBL CD161158 [ GCAACGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAACGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACGC TTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGAT ]
[+] EMBL CD069860 [ ATCGACTCTGGGTTGTCGTCTGTATTTCTGTACCAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACATGTGCATTTTTTCTTTGACTGTGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGCCTTTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATAT ]
[+] EMBL CD158220 [ TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC]
[+] EMBL CD158205 [ TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTACTTCTTTCATTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCT ]
consensusID : consensus_8012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT]
[-] EMBL CD129807 [AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8012#0 TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTG 60
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 ATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTT 120
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 CCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGT 180
consensus_8012#1 -------------------AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGT 41
******** ********************************
consensus_8012#0 TCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 240
consensus_8012#1 TCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 101
******* ****************************************************
consensus_8012#0 GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 300
consensus_8012#1 GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 161
************************************************************
consensus_8012#0 CCACTGAAACTAACACTTTTTTT-CGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTC 359
consensus_8012#1 CCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTC 221
** ******************** **** ** ******** *******************
consensus_8012#0 CGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATG---TTCGTTAGATCTTCGAGT 416
consensus_8012#1 CGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT-------- 273
********************************* ***** * ** * *
consensus_8012#0 AGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATT 476
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 AACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTC 536
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 AATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATT 596
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 GACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTC 656
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 ATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTG 716
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 CATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAA 776
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 TCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGA 836
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 AGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACT 896
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 TAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGG 956
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 CCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGAT 1016
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 CCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGA 1076
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 GTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGG 1136
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 TGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGA 1196
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 CATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGC 1256
consensus_8012#1 ------------------------------------------------------------
consensus_8012#0 GTACGCAGCAGAACTCCC 1274
consensus_8012#1 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||