cluster # 8013

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Schistosoma mansoni
cluster # 8013 cluster # 8013 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8013#0 length = 617 sequences # 4

consensus_8013#1 length = 527 sequences # 2

consensusID : consensus_8013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 617
fasta sequence

                              [CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCA-CTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT]

[-] EMBL CD192691             [CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCA CTCATTCTCCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACAC                                                                                                            ]
[-] EMBL CD120355             [                                                                                                                                                                                                                                                  CGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGG TCACCTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT]
[-] EMBL CD120034             [                                                                                                                                                                                                                                                                                        CCAAAACCATTCCATCGATTGCAACTCCACATATCGCCGGTTCA CTCATTCTTCATTTACATCCTTAACTATAGCGCGCAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT]
[-] EMBL CD120465             [                                                                                                                                                                                                                                                                                                       CGATTGCAACTCCACATATCGACGGTTCA CTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAACACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGTCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT]




>consensus_8013#0
CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTCGTCAACAAATCACCAAAA
CCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCTCT
CGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCAC
TATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATC
AACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATT
GCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCCTTAACTATAGCGCACA
ACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCA
TTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACT
ACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATG
CATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACG
GATACAACGTTTGCTAT

consensusID : consensus_8013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCATTCTTCATTTACATCGATTCTAACTCGACAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCGCGACAAACAAACGACCTCCATACTATTGACCCACCACTCACTCACGAATAGTCACCAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATCCAGTTATATCGAGTCCACCAACAAGCTCCACTTCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAAAC]

[+] EMBL CD166025             [CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCATTCTTCATTTACATCGATTCTAACTCGACAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCGCGACAAACAAACGACCTCCATACTATTGACCCACCACTCAC                                                                                                                                                                                                                                                               ]
[+] EMBL CD126610             [           tggagTGC ACTCCACATATCAACGA TC TTTACATCGATTCTAACTCGTC ACAAATCACCAAAACCATTCCATCGA TGCAACTCCACATATCGACGGTTTACTCATTCTTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCAATTCCCTCACGACAAACAAACGATCTCCATACTATTGACCCACCACTCACTCACGAATAGTCACCAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATCCAGTTATATCGAGTCCACCAACAAGCTCCACTTCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAAAC]




>consensus_8013#1
CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTC
GTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCA
TTCTTCATTTACATCGATTCTAACTCGACAACAAATCACCAAAACCATTCCATCGATTGC
AACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCGCGACAAACA
AACGACCTCCATACTATTGACCCACCACTCACTCACGAATAGTCACCAATCTCATGTTTG
TCTAGTCCTTTTACTGCTTATCCAGTTATATCGAGTCCACCAACAAGCTCCACTTCTCTC
GACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACT
ATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCA
ACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8013#0      ------------------CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTC 42
consensus_8013#1      CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTC 60
                                        ************ ********************** ******

consensus_8013#0      GTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCA 102
consensus_8013#1      GTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCA 120
                      ************************************************** *********

consensus_8013#0      TTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAG 162
consensus_8013#1      TTCTTCATTTACATCGATTC-TAACTCGACAACAAATCACCAAAACCATTCCATCGATTG 179
                      ***************  *    * * * *  **   *  *  *   *     *   ** *

consensus_8013#0      CACAAAATATAGGTTCACTA-TCTCCTGTCCACCATACCCATCAATACACACATACAATA 221
consensus_8013#1      CA-ACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCG--CGACA 236
                      ** *    * *  *  **   ** *   * *  ***   ******* * * *   * * *

consensus_8013#0      TACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCAC 281
consensus_8013#1      AACAAACGACCTCCATACTATTGACCCAC---------CACTCACTCACGAATAG-TCAC 286
                       **       *  ****  *  **  **            ** ****   ** *  ****

consensus_8013#0      CAAAACCAT-TCCATCGATTGCAACT-CCACATATCGACGGTTCACTCATTCTTCATTTA 339
consensus_8013#1      CAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATC--CAGTTATATCGAG-TCCACCAA 343
                      ***   *** *   ** * * *   * *  * ****  * ***   **    * **   *

consensus_8013#0      CATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACA 399
consensus_8013#1      CAAGCTCCACTTCTCTCGACATCACAAGTACGCCT----TGCTGACGACGA-CTGACGAA 398
                      **  **  ***       *** *** * * ****       *  ** ** *    *   *

consensus_8013#0      TCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATC 459
consensus_8013#1      TAGCA-CAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAAT--------ACA 449
                      *  ** *** **  * ***** **     * ****  * *     ****        *  

consensus_8013#0      GAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTG 519
consensus_8013#1      CACATACAATATACTGCAACTCCACAT---ATCA-----ACGATTCATTTACATCGATTC 501
                       * ** *** *** * ***** **  *   ***      * ******        * ** 

consensus_8013#0      ATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGA 579
consensus_8013#1      -TAACTCGTCAACAAATCAC-CAAAAAC-------------------------------- 527
                       *  * **  * ****  *  **   *                                 

consensus_8013#0      CGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT 617
consensus_8013#1      --------------------------------------